Variant report

Variant	rs34969841
Chromosome Location	chr10:97138995-97138996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97132552..97135428-chr10:97138825..97140686,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11545359	0.88[AMR][1000 genomes]
rs12771392	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12773574	0.85[EUR][1000 genomes]
rs12777787	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12782272	0.81[EUR][1000 genomes]
rs34206975	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34235944	0.85[EUR][1000 genomes]
rs34258576	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34363946	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34600466	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35045072	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35265356	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35348091	0.88[AMR][1000 genomes]
rs35561941	0.85[EUR][1000 genomes]
rs35678254	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35707641	0.88[AMR][1000 genomes]
rs35892931	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41315245	0.85[EUR][1000 genomes]
rs56363857	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67008126	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67201255	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71482354	0.94[AMR][1000 genomes]
rs72822527	0.86[EUR][1000 genomes]
rs72822553	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:97109000-97148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:97116400-97139600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:97116400-97142400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:97116600-97139400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:97116800-97141400	Weak transcription	Fetal Lung	lung
8	chr10:97117400-97139200	Weak transcription	Brain Germinal Matrix	brain
9	chr10:97120400-97141400	Weak transcription	Gastric	stomach
10	chr10:97121000-97148000	Weak transcription	Esophagus	oesophagus
11	chr10:97122000-97149400	Weak transcription	Spleen	Spleen
12	chr10:97126200-97139400	Weak transcription	Lung	lung
13	chr10:97130200-97141600	Weak transcription	Fetal Intestine Small	intestine
14	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:97131200-97140200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:97131200-97140200	Weak transcription	HSMM	muscle
17	chr10:97131600-97139800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:97131800-97140200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:97132000-97139200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:97132000-97139200	Weak transcription	Fetal Intestine Large	intestine
21	chr10:97133000-97142400	Genic enhancers	Adipose Nuclei	Adipose
22	chr10:97135600-97139000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr10:97135600-97139400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr10:97135600-97139800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr10:97135800-97141600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:97135800-97145000	Strong transcription	Fetal Brain Female	brain
28	chr10:97136000-97141200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr10:97136200-97139200	Weak transcription	Brain Angular Gyrus	brain
30	chr10:97136200-97145400	Strong transcription	Placenta	Placenta
31	chr10:97136400-97139600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:97137000-97140400	Genic enhancers	Colon Smooth Muscle	Colon
33	chr10:97137200-97139200	Enhancers	Aorta	Aorta
34	chr10:97137200-97140800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:97137200-97147400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:97137200-97148000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr10:97137400-97139600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr10:97137600-97145000	Strong transcription	Fetal Muscle Leg	muscle
39	chr10:97137800-97139800	Genic enhancers	Left Ventricle	heart
40	chr10:97137800-97140400	Strong transcription	Pancreas	Pancrea
41	chr10:97137800-97140400	Genic enhancers	Rectal Smooth Muscle	rectum
42	chr10:97137800-97142200	Strong transcription	HSMMtube	muscle
43	chr10:97137800-97144000	Strong transcription	Psoas Muscle	Psoas
44	chr10:97137800-97144200	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr10:97137800-97146200	Weak transcription	Small Intestine	intestine
46	chr10:97137800-97147400	Strong transcription	HepG2	liver
47	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr10:97138000-97140000	Genic enhancers	Stomach Smooth Muscle	stomach
49	chr10:97138000-97145000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:97138200-97139200	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links