Variant report

Variant	rs35707641
Chromosome Location	chr10:97073114-97073115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97071593..97074402-chr10:97139756..97142626,2	K562	blood:
2	chr10:97071047..97076253-chr10:97076532..97079541,6	K562	blood:
3	chr10:97071603..97074212-chr10:97074276..97076848,4	K562	blood:
4	chr10:97072681..97075198-chr10:97078995..97080979,2	MCF-7	breast:
5	chr10:97054860..97057387-chr10:97070796..97073546,2	K562	blood:
6	chr10:97048574..97053908-chr10:97072815..97077424,5	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11545359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12771392	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12773574	1.00[AFR][1000 genomes]
rs12777787	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12782272	1.00[AFR][1000 genomes]
rs34206975	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs34258576	0.88[AMR][1000 genomes]
rs34363946	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs34600466	0.94[AMR][1000 genomes]
rs34969841	0.88[AMR][1000 genomes]
rs35045072	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs35265356	1.00[AFR][1000 genomes]
rs35348091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35561941	1.00[AFR][1000 genomes]
rs35678254	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs35892931	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56363857	0.88[AMR][1000 genomes]
rs67008126	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs67201255	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs71482354	0.82[AMR][1000 genomes]
rs72822553	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97063400-97073600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr10:97064000-97073200	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:97064600-97078200	Weak transcription	Colonic Mucosa	Colon
4	chr10:97066000-97073600	Weak transcription	Fetal Intestine Small	intestine
5	chr10:97067200-97073400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:97068600-97073800	Weak transcription	Brain Angular Gyrus	brain
7	chr10:97069000-97073200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:97069000-97073400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:97069000-97073600	Weak transcription	HepG2	liver
10	chr10:97069000-97075600	Enhancers	K562	blood
11	chr10:97069200-97087000	Weak transcription	HSMM	muscle
12	chr10:97069400-97074000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:97069600-97073800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:97069800-97075200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:97070200-97073200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:97070200-97074000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:97070200-97074200	Enhancers	Fetal Heart	heart
18	chr10:97070400-97073200	Weak transcription	Brain Germinal Matrix	brain
19	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
20	chr10:97070800-97073400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:97070800-97074000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:97070800-97085800	Weak transcription	Small Intestine	intestine
23	chr10:97070800-97094200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr10:97071000-97073600	Weak transcription	Lung	lung
25	chr10:97071000-97073600	Weak transcription	Right Ventricle	heart
26	chr10:97071000-97074000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr10:97071000-97074000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:97071000-97074000	Weak transcription	Spleen	Spleen
29	chr10:97071000-97075200	Weak transcription	Gastric	stomach
30	chr10:97071000-97086000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr10:97071000-97087000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:97071000-97087000	Weak transcription	Esophagus	oesophagus
33	chr10:97071000-97095800	Weak transcription	Pancreas	Pancrea
34	chr10:97071200-97098800	Weak transcription	Brain Substantia Nigra	brain
35	chr10:97071600-97073400	Weak transcription	Ovary	ovary
36	chr10:97071600-97073600	Weak transcription	Brain Hippocampus Middle	brain
37	chr10:97071600-97074000	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr10:97072000-97073400	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr10:97072000-97087000	Strong transcription	Adipose Nuclei	Adipose
40	chr10:97072200-97073400	Enhancers	H1 Cell Line	embryonic stem cell
41	chr10:97072200-97073400	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr10:97072200-97073600	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr10:97072200-97074000	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr10:97072200-97074600	Strong transcription	Placenta	Placenta
45	chr10:97072200-97075400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:97072400-97073600	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr10:97072400-97073800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:97072400-97075400	Strong transcription	Fetal Brain Female	brain
49	chr10:97072400-97075800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:97072400-97078400	Weak transcription	Fetal Lung	lung

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