Variant report

Variant	rs12777787
Chromosome Location	chr10:97107720-97107721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97095320..97097594-chr10:97105673..97108516,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11545359	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs12771392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12773574	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12782272	1.00[AFR][1000 genomes]
rs34206975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34235944	0.84[EUR][1000 genomes]
rs34258576	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34363946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34600466	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34969841	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35045072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35265356	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35348091	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs35561941	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35678254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35707641	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs35892931	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41315245	0.84[EUR][1000 genomes]
rs56363857	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67008126	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67201255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71482354	0.87[AMR][1000 genomes]
rs72822527	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72822553	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97070400-97139600	Weak transcription	Fetal Brain Male	brain
2	chr10:97080000-97109600	Weak transcription	Fetal Lung	lung
3	chr10:97087800-97115400	Weak transcription	Colonic Mucosa	Colon
4	chr10:97088000-97110600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr10:97094600-97118000	Weak transcription	HSMM	muscle
6	chr10:97095000-97110600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:97095000-97115200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:97096400-97108400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:97096400-97110600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:97096600-97110600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:97096800-97110600	Weak transcription	Psoas Muscle	Psoas
12	chr10:97097800-97110600	Weak transcription	Right Atrium	heart
13	chr10:97097800-97116000	Weak transcription	Spleen	Spleen
14	chr10:97099200-97108400	Weak transcription	Gastric	stomach
15	chr10:97099200-97110600	Weak transcription	Lung	lung
16	chr10:97099200-97110800	Weak transcription	Fetal Intestine Small	intestine
17	chr10:97099200-97113400	Weak transcription	Ovary	ovary
18	chr10:97099200-97115200	Weak transcription	Esophagus	oesophagus
19	chr10:97099200-97129200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:97099400-97110000	Weak transcription	HMEC	breast
21	chr10:97099400-97110200	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:97099400-97111000	Weak transcription	Brain Substantia Nigra	brain
23	chr10:97100800-97108600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr10:97101200-97108400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:97101600-97108600	Strong transcription	Stomach Smooth Muscle	stomach
26	chr10:97102000-97108400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr10:97102200-97136400	Weak transcription	Fetal Kidney	kidney
28	chr10:97102400-97108400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr10:97103400-97110400	Strong transcription	Colon Smooth Muscle	Colon
30	chr10:97103400-97110600	Strong transcription	Brain Anterior Caudate	brain
31	chr10:97103400-97118000	Strong transcription	Fetal Brain Female	brain
32	chr10:97104200-97108000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:97104200-97108400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:97104200-97108400	Weak transcription	Brain Angular Gyrus	brain
35	chr10:97105000-97118200	Strong transcription	Aorta	Aorta
36	chr10:97105400-97110400	Weak transcription	Fetal Intestine Large	intestine
37	chr10:97105600-97110200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:97105800-97108400	Weak transcription	Liver	Liver
39	chr10:97105800-97110800	Enhancers	HepG2	liver
40	chr10:97106000-97108000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr10:97106000-97108000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:97106000-97108600	Weak transcription	Fetal Muscle Leg	muscle
43	chr10:97106000-97108600	Weak transcription	HSMMtube	muscle
44	chr10:97106200-97108800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:97106200-97110000	Weak transcription	Brain Germinal Matrix	brain
46	chr10:97106400-97110600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr10:97106600-97107800	Enhancers	H1 Cell Line	embryonic stem cell
48	chr10:97106600-97108400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr10:97106600-97108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:97106600-97108800	Enhancers	Fetal Heart	heart

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