Variant report

Variant	rs35561941
Chromosome Location	chr10:97172062-97172063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11545359	1.00[AFR][1000 genomes]
rs12771392	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12773574	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12777787	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12782272	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34206975	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34235944	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34258576	0.88[EUR][1000 genomes]
rs34363946	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34600466	0.83[EUR][1000 genomes]
rs34969841	0.85[EUR][1000 genomes]
rs34975945	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35045072	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs35265356	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35348091	1.00[AFR][1000 genomes]
rs35480352	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35678254	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35707641	1.00[AFR][1000 genomes]
rs35892931	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41315245	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67008126	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67201255	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72822553	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97154400-97190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:97156800-97173400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:97156800-97182600	Weak transcription	Esophagus	oesophagus
4	chr10:97157000-97173200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:97157000-97174000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:97157000-97183200	Weak transcription	Colonic Mucosa	Colon
7	chr10:97157000-97190400	Weak transcription	Spleen	Spleen
8	chr10:97158600-97199600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:97159200-97187000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:97165400-97177200	Strong transcription	HepG2	liver
11	chr10:97166400-97185800	Weak transcription	Fetal Lung	lung
12	chr10:97167000-97173600	Weak transcription	Gastric	stomach
13	chr10:97167000-97173800	Weak transcription	Brain Germinal Matrix	brain
14	chr10:97167200-97173800	Weak transcription	Pancreas	Pancrea
15	chr10:97167200-97183200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:97167800-97173400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:97168000-97173400	Weak transcription	Fetal Intestine Small	intestine
18	chr10:97168200-97172600	Weak transcription	Psoas Muscle	Psoas
19	chr10:97168200-97173800	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr10:97168200-97174000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:97168200-97174000	Weak transcription	Lung	lung
22	chr10:97168600-97175200	Weak transcription	HSMMtube	muscle
23	chr10:97169000-97177000	Strong transcription	Liver	Liver
24	chr10:97169200-97172400	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:97169200-97180400	Weak transcription	Ovary	ovary
26	chr10:97169400-97174400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:97169600-97174400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr10:97169600-97204800	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr10:97169800-97172400	Strong transcription	Colon Smooth Muscle	Colon
30	chr10:97169800-97173000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr10:97169800-97173800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr10:97169800-97174200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:97169800-97182800	Weak transcription	Stomach Mucosa	stomach
34	chr10:97170000-97172200	Weak transcription	Brain Angular Gyrus	brain
35	chr10:97170200-97184600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:97170400-97172200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr10:97170400-97173400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:97170400-97173800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:97170400-97173800	Weak transcription	Brain Substantia Nigra	brain
40	chr10:97170400-97175200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:97170600-97172200	Weak transcription	Brain Anterior Caudate	brain
42	chr10:97170600-97172800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr10:97170600-97173000	Weak transcription	Fetal Stomach	stomach
44	chr10:97170600-97173200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr10:97170600-97173800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr10:97170600-97175000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr10:97170600-97175200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr10:97170600-97197800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr10:97171000-97172200	Weak transcription	Brain Hippocampus Middle	brain
50	chr10:97171000-97172200	Enhancers	Fetal Heart	heart

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