Variant report

Variant	rs34258576
Chromosome Location	chr10:97150595-97150596
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97147507..97149685-chr10:97150420..97152173,2	MCF-7	breast:
2	chr10:97149803..97150837-chr10:97360594..97361494,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11545359	0.88[AMR][1000 genomes]
rs12771392	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12773574	0.88[EUR][1000 genomes]
rs12777787	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12782272	0.83[EUR][1000 genomes]
rs34206975	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34235944	0.88[EUR][1000 genomes]
rs34363946	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34600466	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34969841	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35045072	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35265356	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35348091	0.88[AMR][1000 genomes]
rs35561941	0.88[EUR][1000 genomes]
rs35678254	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35707641	0.88[AMR][1000 genomes]
rs35892931	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41315245	0.88[EUR][1000 genomes]
rs56363857	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs67008126	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67201255	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71482354	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72822527	0.80[EUR][1000 genomes]
rs72822553	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97107200-97151800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:97130200-97156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:97135600-97155600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:97137800-97156000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:97140600-97158600	Weak transcription	HSMM	muscle
6	chr10:97140800-97152400	Weak transcription	Colonic Mucosa	Colon
7	chr10:97142200-97151800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:97142200-97152400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:97142400-97152400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:97142600-97155600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:97143000-97151400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:97143600-97151000	Weak transcription	Fetal Lung	lung
13	chr10:97143600-97151400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:97144000-97151600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr10:97144000-97152400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:97144000-97152400	Weak transcription	Psoas Muscle	Psoas
17	chr10:97144000-97155400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:97144200-97151600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:97144400-97152400	Weak transcription	Ovary	ovary
20	chr10:97144400-97154000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:97144400-97155600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:97145000-97151200	Weak transcription	Fetal Brain Female	brain
23	chr10:97145000-97153200	Weak transcription	Fetal Muscle Leg	muscle
24	chr10:97146400-97152400	Enhancers	GM12878-XiMat	blood
25	chr10:97146800-97168400	Weak transcription	Small Intestine	intestine
26	chr10:97147000-97150800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:97147000-97152600	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr10:97147200-97152000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:97147200-97152400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:97147200-97153800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:97147200-97158800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
32	chr10:97147400-97150800	Enhancers	Right Atrium	heart
33	chr10:97147400-97152600	Enhancers	Brain Anterior Caudate	brain
34	chr10:97147400-97154000	Genic enhancers	Stomach Smooth Muscle	stomach
35	chr10:97147400-97154400	Genic enhancers	Left Ventricle	heart
36	chr10:97147600-97153400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:97148000-97151600	Enhancers	Brain Cingulate Gyrus	brain
38	chr10:97148200-97150600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr10:97148400-97154400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr10:97148600-97150600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr10:97148600-97152600	Weak transcription	Fetal Intestine Large	intestine
42	chr10:97148600-97153400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr10:97148600-97156600	Weak transcription	Esophagus	oesophagus
44	chr10:97149000-97153000	Strong transcription	Placenta	Placenta
45	chr10:97149200-97151400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
46	chr10:97149200-97155600	Weak transcription	Brain Germinal Matrix	brain
47	chr10:97149200-97155800	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr10:97149400-97150800	Weak transcription	Fetal Heart	heart
49	chr10:97149400-97150800	Strong transcription	Fetal Intestine Small	intestine
50	chr10:97149600-97150800	Weak transcription	Fetal Brain Male	brain

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