Variant report
Variant | rs7253466 |
---|---|
Chromosome Location | chr19:21081019-21081020 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10454111 | 0.89[CEU][hapmap];1.00[JPT][hapmap] |
rs10454112 | 0.89[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes] |
rs10454113 | 0.88[EUR][1000 genomes] |
rs10454114 | 0.88[EUR][1000 genomes] |
rs10454115 | 0.89[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
rs1054688 | 1.00[ASN][1000 genomes] |
rs11085402 | 0.98[EUR][1000 genomes] |
rs11085405 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11085406 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11085407 | 0.89[EUR][1000 genomes] |
rs11085409 | 0.89[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes] |
rs11085410 | 0.88[EUR][1000 genomes] |
rs11085412 | 0.88[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes] |
rs11085413 | 0.85[EUR][1000 genomes] |
rs11085414 | 0.85[EUR][1000 genomes] |
rs11085415 | 0.85[EUR][1000 genomes] |
rs11085416 | 0.85[EUR][1000 genomes] |
rs11665978 | 0.85[EUR][1000 genomes] |
rs11665995 | 0.85[EUR][1000 genomes] |
rs11666247 | 0.98[EUR][1000 genomes] |
rs11666887 | 0.84[EUR][1000 genomes] |
rs11667715 | 0.89[EUR][1000 genomes] |
rs11668256 | 0.85[EUR][1000 genomes] |
rs11668779 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11669114 | 0.85[EUR][1000 genomes] |
rs11669186 | 1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11669193 | 0.89[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes] |
rs11669194 | 0.89[EUR][1000 genomes] |
rs11669264 | 0.83[EUR][1000 genomes] |
rs11669649 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11670246 | 0.85[EUR][1000 genomes] |
rs11670688 | 0.96[EUR][1000 genomes] |
rs11670696 | 0.96[EUR][1000 genomes] |
rs11672610 | 0.85[EUR][1000 genomes] |
rs11673251 | 0.98[EUR][1000 genomes] |
rs11673298 | 0.98[EUR][1000 genomes] |
rs11673334 | 0.87[EUR][1000 genomes] |
rs11879021 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11882306 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs11882679 | 0.89[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes] |
rs11883175 | 0.89[EUR][1000 genomes] |
rs11883215 | 0.89[EUR][1000 genomes] |
rs11883317 | 0.89[EUR][1000 genomes] |
rs12162257 | 0.87[EUR][1000 genomes] |
rs12162258 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12972234 | 1.00[JPT][hapmap] |
rs12980935 | 0.87[CHD][hapmap];1.00[JPT][hapmap] |
rs17679995 | 0.89[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes] |
rs2545225 | 0.94[EUR][1000 genomes] |
rs34492986 | 0.89[EUR][1000 genomes] |
rs35709943 | 0.89[EUR][1000 genomes] |
rs35717492 | 0.89[EUR][1000 genomes] |
rs35818717 | 0.89[EUR][1000 genomes] |
rs35959824 | 0.89[EUR][1000 genomes] |
rs4327182 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs55637671 | 0.85[EUR][1000 genomes] |
rs55715113 | 0.87[EUR][1000 genomes] |
rs55718523 | 0.87[EUR][1000 genomes] |
rs55721150 | 0.89[EUR][1000 genomes] |
rs55840212 | 0.87[EUR][1000 genomes] |
rs55844489 | 0.89[EUR][1000 genomes] |
rs55848071 | 0.89[EUR][1000 genomes] |
rs55892094 | 0.89[EUR][1000 genomes] |
rs55952992 | 0.98[EUR][1000 genomes] |
rs55988249 | 0.87[EUR][1000 genomes] |
rs55997215 | 0.89[EUR][1000 genomes] |
rs56004027 | 0.87[EUR][1000 genomes] |
rs56037237 | 0.98[EUR][1000 genomes] |
rs56094670 | 0.82[EUR][1000 genomes] |
rs56137123 | 0.85[EUR][1000 genomes] |
rs56137836 | 0.98[EUR][1000 genomes] |
rs56170000 | 0.87[EUR][1000 genomes] |
rs56204435 | 0.89[EUR][1000 genomes] |
rs56207286 | 0.85[EUR][1000 genomes] |
rs56210506 | 0.87[EUR][1000 genomes] |
rs56216536 | 0.89[EUR][1000 genomes] |
rs56231962 | 0.85[EUR][1000 genomes] |
rs56240903 | 0.89[EUR][1000 genomes] |
rs56274621 | 0.89[EUR][1000 genomes] |
rs56280451 | 0.98[EUR][1000 genomes] |
rs56321708 | 0.85[EUR][1000 genomes] |
rs56339351 | 0.85[EUR][1000 genomes] |
rs56356813 | 0.87[EUR][1000 genomes] |
rs56373736 | 0.87[EUR][1000 genomes] |
rs56393308 | 0.85[EUR][1000 genomes] |
rs56405080 | 0.98[EUR][1000 genomes] |
rs7260618 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73003406 | 0.96[EUR][1000 genomes] |
rs73003409 | 0.96[EUR][1000 genomes] |
rs73003412 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73003418 | 0.94[EUR][1000 genomes] |
rs73003491 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73003496 | 0.94[EUR][1000 genomes] |
rs73005085 | 0.94[EUR][1000 genomes] |
rs73005103 | 0.89[EUR][1000 genomes] |
rs73005106 | 0.90[EUR][1000 genomes] |
rs73005114 | 0.89[EUR][1000 genomes] |
rs73005122 | 0.89[EUR][1000 genomes] |
rs73005134 | 0.89[EUR][1000 genomes] |
rs73007028 | 0.94[EUR][1000 genomes] |
rs73007055 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73007056 | 1.00[EUR][1000 genomes] |
rs73007061 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73007063 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73007067 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73007070 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73007376 | 0.87[EUR][1000 genomes] |
rs73017144 | 0.88[EUR][1000 genomes] |
rs73020056 | 0.98[EUR][1000 genomes] |
rs73020057 | 0.98[EUR][1000 genomes] |
rs73020059 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73020060 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs73020063 | 0.98[EUR][1000 genomes] |
rs73021506 | 0.82[EUR][1000 genomes] |
rs73021507 | 0.88[EUR][1000 genomes] |
rs73021512 | 0.86[EUR][1000 genomes] |
rs73021513 | 0.86[EUR][1000 genomes] |
rs73021516 | 0.85[EUR][1000 genomes] |
rs73021542 | 0.85[EUR][1000 genomes] |
rs73021543 | 0.85[EUR][1000 genomes] |
rs73021544 | 0.85[EUR][1000 genomes] |
rs73021545 | 0.85[EUR][1000 genomes] |
rs73021546 | 0.85[EUR][1000 genomes] |
rs73021547 | 0.85[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2752729 | chr19:20818886-21169554 | ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
2 | nsv1062776 | chr19:20818886-21273361 | Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
3 | nsv932110 | chr19:20818886-21278952 | Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
4 | esv2763043 | chr19:20818886-21290543 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
5 | nsv1063954 | chr19:21000562-21177577 | Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
6 | nsv578946 | chr19:21014403-21151796 | ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
7 | esv3385528 | chr19:21030777-21495566 | Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
8 | nsv960809 | chr19:21031718-21121801 | Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
9 | esv3380168 | chr19:21032661-21103629 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
10 | nsv1055738 | chr19:21040181-21109969 | Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
11 | esv3348077 | chr19:21041161-21103393 | ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
12 | nsv522090 | chr19:21041350-21109784 | ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
13 | nsv578947 | chr19:21041350-21109784 | Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
14 | nsv817536 | chr19:21041855-21348237 | Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
15 | esv1848134 | chr19:21049520-21084070 | ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
16 | nsv578948 | chr19:21052924-21094854 | ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
17 | nsv515576 | chr19:21052924-21101749 | Active TSS ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
18 | nsv1067258 | chr19:21053665-21100586 | ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
19 | nsv1057237 | chr19:21053665-21104492 | ZNF genes & repeats Weak transcription Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
20 | nsv1062802 | chr19:21053665-21109969 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
21 | nsv1067455 | chr19:21053665-21141787 | Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
22 | nsv1058430 | chr19:21063759-21114796 | Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
23 | esv3507448 | chr19:21065524-21082151 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | inside rSNPs | diseases |
24 | esv3507449 | chr19:21065524-21082151 | ZNF genes & repeats Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
25 | esv3398599 | chr19:21069562-21083473 | ZNF genes & repeats Active TSS Weak transcription | n/a | n/a | inside rSNPs | diseases |
26 | esv3526725 | chr19:21074300-21097346 | ZNF genes & repeats Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
27 | esv3526726 | chr19:21074300-21097346 | ZNF genes & repeats Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs7253466 | MEF2B | cis | parietal | SCAN |
rs7253466 | ZNF492 | cis | cerebellum | SCAN |
rs7253466 | INSL3 | cis | parietal | SCAN |
rs7253466 | ZNF85 | Cis_1M | lymphoblastoid | RTeQTL |
rs7253466 | ATP13A1 | cis | parietal | SCAN |
rs7253466 | ZNF85 | cis | multi-tissue | Pritchard |
rs7253466 | ZNF85 | cis | lymphoblastoid | seeQTL |
rs7253466 | ZNF85 | cis | parietal | SCAN |
rs7253466 | NWD1 | cis | parietal | SCAN |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:21078800-21081200 | ZNF genes & repeats | Adipose Nuclei | Adipose |
2 | chr19:21078800-21082600 | ZNF genes & repeats | Monocytes-CD14+_RO01746 | blood |