Variant report

Variant	rs73134353
Chromosome Location	chr5:95682432-95682433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs4594875	0.81[AFR][1000 genomes]
rs57420820	0.86[AFR][1000 genomes]
rs58062605	0.95[AFR][1000 genomes]
rs58558890	0.94[AFR][1000 genomes]
rs58692306	0.95[AFR][1000 genomes]
rs59091392	0.92[AFR][1000 genomes]
rs59443370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61032727	0.86[AFR][1000 genomes]
rs73134324	0.86[AFR][1000 genomes]
rs73134332	0.86[AFR][1000 genomes]
rs73134336	0.86[AFR][1000 genomes]
rs73134341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138325	0.81[AFR][1000 genomes]
rs73138330	0.81[AFR][1000 genomes]
rs73138335	0.92[AFR][1000 genomes]
rs73138353	0.83[AFR][1000 genomes]
rs73138361	0.94[AFR][1000 genomes]
rs73138362	0.90[AFR][1000 genomes]
rs73138363	0.82[AFR][1000 genomes]
rs73138367	0.86[AFR][1000 genomes]
rs73138370	0.97[AFR][1000 genomes]
rs73138373	0.97[AFR][1000 genomes]
rs73138391	0.86[AFR][1000 genomes]
rs73138393	1.00[AFR][1000 genomes]
rs73144659	0.82[AFR][1000 genomes]
rs73144661	0.86[AFR][1000 genomes]
rs73144668	0.86[AFR][1000 genomes]
rs73144673	0.92[AFR][1000 genomes]
rs73144675	0.97[AFR][1000 genomes]
rs73144682	0.92[AFR][1000 genomes]
rs73144684	0.86[AFR][1000 genomes]
rs73144687	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95672200-95687400	Enhancers	Hela-S3	cervix
2	chr5:95674800-95683200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:95674800-95686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:95676400-95683000	Weak transcription	HSMM	muscle
5	chr5:95676400-95683000	Weak transcription	Osteobl	bone
6	chr5:95679400-95683400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:95680400-95686200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:95680600-95683200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:95681000-95683000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:95681000-95685400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr5:95681200-95685800	Weak transcription	HepG2	liver
12	chr5:95681400-95683400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:95681600-95683000	Weak transcription	HUVEC	blood vessel
14	chr5:95681800-95683200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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