Variant report

Variant	rs58558890
Chromosome Location	chr5:95606026-95606027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs57207208	1.00[AMR][1000 genomes]
rs57420820	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58062605	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58692306	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59091392	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59443370	0.94[AFR][1000 genomes]
rs61032727	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134324	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134332	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134336	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134341	0.94[AFR][1000 genomes]
rs73134346	0.94[AFR][1000 genomes]
rs73134351	0.94[AFR][1000 genomes]
rs73134353	0.94[AFR][1000 genomes]
rs73136598	1.00[AMR][1000 genomes]
rs73138325	1.00[AMR][1000 genomes]
rs73138330	1.00[AMR][1000 genomes]
rs73138335	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138353	1.00[AMR][1000 genomes]
rs73138361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138362	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138363	1.00[AMR][1000 genomes]
rs73138367	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138370	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138373	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138391	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138393	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144658	1.00[AMR][1000 genomes]
rs73144659	1.00[AMR][1000 genomes]
rs73144661	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144668	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144670	1.00[AMR][1000 genomes]
rs73144673	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144675	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144682	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144684	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144687	1.00[AMR][1000 genomes]
rs7727999	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95595400-95614800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:95605200-95606400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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