Variant report

Variant	rs73144670
Chromosome Location	chr5:95631726-95631727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs57207208	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57420820	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58062605	1.00[AMR][1000 genomes]
rs58558890	1.00[AMR][1000 genomes]
rs58692306	1.00[AMR][1000 genomes]
rs59091392	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61032727	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134324	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134332	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134336	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73136598	1.00[AMR][1000 genomes]
rs73138325	1.00[AMR][1000 genomes]
rs73138330	1.00[AMR][1000 genomes]
rs73138335	1.00[AMR][1000 genomes]
rs73138353	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138361	1.00[AMR][1000 genomes]
rs73138362	1.00[AMR][1000 genomes]
rs73138363	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138367	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138370	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138373	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138391	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138393	1.00[AMR][1000 genomes]
rs73144658	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144659	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144661	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144668	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144673	1.00[AMR][1000 genomes]
rs73144675	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144682	1.00[AMR][1000 genomes]
rs73144684	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144687	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727999	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95612600-95632400	Weak transcription	Aorta	Aorta
2	chr5:95617400-95637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:95625000-95632400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:95627000-95631800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:95627000-95646000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:95627200-95646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:95628600-95631800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:95629200-95633200	Weak transcription	Adipose Nuclei	Adipose
9	chr5:95630400-95632400	Weak transcription	Fetal Heart	heart
10	chr5:95630600-95632200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:95630600-95632400	Weak transcription	NHDF-Ad	bronchial
12	chr5:95630600-95633000	Weak transcription	Liver	Liver
13	chr5:95630600-95635400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:95630800-95633000	Weak transcription	A549	lung
15	chr5:95630800-95633800	Weak transcription	NH-A	brain
16	chr5:95631000-95632200	Weak transcription	Brain Hippocampus Middle	brain
17	chr5:95631000-95632400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:95631000-95634200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:95631200-95632200	Weak transcription	Brain Substantia Nigra	brain
20	chr5:95631200-95632200	Weak transcription	HepG2	liver
21	chr5:95631200-95632400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:95631200-95632400	Weak transcription	NHLF	lung
23	chr5:95631200-95633000	Weak transcription	Brain Anterior Caudate	brain
24	chr5:95631200-95633000	Weak transcription	HSMM	muscle
25	chr5:95631200-95635200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:95631400-95631800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:95631400-95632400	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr5:95631400-95632400	Weak transcription	Osteobl	bone
29	chr5:95631600-95633000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:95631600-95633200	Enhancers	Monocytes-CD14+_RO01746	blood

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