Variant report

Variant	rs73144673
Chromosome Location	chr5:95632493-95632494
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs57207208	1.00[AMR][1000 genomes]
rs57420820	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58062605	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58558890	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58692306	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59091392	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59443370	0.92[AFR][1000 genomes]
rs61032727	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134324	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134332	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134336	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134341	0.92[AFR][1000 genomes]
rs73134346	0.92[AFR][1000 genomes]
rs73134351	0.92[AFR][1000 genomes]
rs73134353	0.92[AFR][1000 genomes]
rs73136598	1.00[AMR][1000 genomes]
rs73138325	1.00[AMR][1000 genomes]
rs73138330	1.00[AMR][1000 genomes]
rs73138335	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138353	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138361	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138362	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138363	1.00[AMR][1000 genomes]
rs73138367	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138391	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138393	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144658	1.00[AMR][1000 genomes]
rs73144659	1.00[AMR][1000 genomes]
rs73144661	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144668	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144670	1.00[AMR][1000 genomes]
rs73144675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144684	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144687	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727999	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95617400-95637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:95627000-95646000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:95627200-95646600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:95629200-95633200	Weak transcription	Adipose Nuclei	Adipose
5	chr5:95630600-95633000	Weak transcription	Liver	Liver
6	chr5:95630600-95635400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:95630800-95633000	Weak transcription	A549	lung
8	chr5:95630800-95633800	Weak transcription	NH-A	brain
9	chr5:95631000-95634200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr5:95631200-95633000	Weak transcription	Brain Anterior Caudate	brain
11	chr5:95631200-95633000	Weak transcription	HSMM	muscle
12	chr5:95631200-95635200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:95631600-95633000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:95631600-95633200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr5:95631800-95635400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:95631800-95635400	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr5:95632200-95632600	Enhancers	Brain Hippocampus Middle	brain
18	chr5:95632200-95633400	Enhancers	Brain Substantia Nigra	brain
19	chr5:95632200-95633600	Enhancers	HepG2	liver
20	chr5:95632200-95634200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr5:95632200-95634200	Enhancers	GM12878-XiMat	blood
22	chr5:95632200-95634600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:95632200-95635400	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr5:95632400-95633200	Enhancers	Brain Cingulate Gyrus	brain
25	chr5:95632400-95633400	Enhancers	Aorta	Aorta
26	chr5:95632400-95633600	Enhancers	Pancreatic Islets	Pancreatic Islet
27	chr5:95632400-95634000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr5:95632400-95634000	Enhancers	Fetal Heart	heart
29	chr5:95632400-95634200	Enhancers	NHDF-Ad	bronchial
30	chr5:95632400-95634400	Enhancers	NHLF	lung
31	chr5:95632400-95634400	Enhancers	Osteobl	bone
32	chr5:95632400-95634600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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