Variant report

Variant	rs59091392
Chromosome Location	chr5:95656587-95656588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs4594875	0.83[AFR][1000 genomes]
rs57207208	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57420820	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58062605	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58558890	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58692306	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59443370	0.92[AFR][1000 genomes]
rs61032727	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134324	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134332	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134336	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134341	0.92[AFR][1000 genomes]
rs73134346	0.92[AFR][1000 genomes]
rs73134351	0.92[AFR][1000 genomes]
rs73134353	0.92[AFR][1000 genomes]
rs73136598	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138325	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138330	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138335	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138353	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138361	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138362	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138363	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138367	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138373	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138391	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138393	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144658	1.00[AMR][1000 genomes]
rs73144659	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144661	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144668	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144670	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144673	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144675	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144682	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144684	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144687	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727999	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95644600-95658000	Weak transcription	Aorta	Aorta
2	chr5:95651400-95657400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:95652600-95656600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:95652600-95657600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:95652800-95657800	Weak transcription	HepG2	liver
6	chr5:95652800-95658600	Weak transcription	Liver	Liver
7	chr5:95653000-95657800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:95653200-95658000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:95654000-95659000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:95655000-95658000	Weak transcription	Esophagus	oesophagus
11	chr5:95655600-95657600	Enhancers	Hela-S3	cervix
12	chr5:95655800-95658200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr5:95656000-95657600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:95656200-95657600	Enhancers	NHEK	skin
15	chr5:95656200-95658000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:95656200-95658000	Enhancers	Osteobl	bone
17	chr5:95656400-95657400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:95656400-95657400	Enhancers	HSMM	muscle
19	chr5:95656400-95657400	Enhancers	NH-A	brain
20	chr5:95656400-95658000	Enhancers	HMEC	breast
21	chr5:95656400-95658000	Enhancers	NHLF	lung
22	chr5:95656400-95658200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:95656400-95658200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:95656400-95658200	Enhancers	NHDF-Ad	bronchial

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