Variant report

Variant	rs73134324
Chromosome Location	chr5:95654788-95654789
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs4594875	0.90[AFR][1000 genomes]
rs57207208	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57420820	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58062605	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58558890	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58692306	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59091392	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59443370	0.86[AFR][1000 genomes]
rs61032727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134332	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134336	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134341	0.86[AFR][1000 genomes]
rs73134346	0.86[AFR][1000 genomes]
rs73134351	0.86[AFR][1000 genomes]
rs73134353	0.86[AFR][1000 genomes]
rs73136598	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138325	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138330	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138335	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138353	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138361	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138362	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138363	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138370	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138373	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138391	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138393	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144658	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144659	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144661	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144668	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144670	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144673	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144675	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144682	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727999	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95634000-95656400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:95644600-95658000	Weak transcription	Aorta	Aorta
3	chr5:95647400-95656000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:95651400-95657400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:95652200-95655000	Weak transcription	GM12878-XiMat	blood
6	chr5:95652400-95656200	Weak transcription	NHEK	skin
7	chr5:95652400-95656400	Weak transcription	NHLF	lung
8	chr5:95652600-95656400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:95652600-95656600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:95652600-95657600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:95652800-95657800	Weak transcription	HepG2	liver
12	chr5:95652800-95658600	Weak transcription	Liver	Liver
13	chr5:95653000-95657800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:95653200-95658000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:95654000-95655200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr5:95654000-95655600	Weak transcription	Hela-S3	cervix
17	chr5:95654000-95655800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr5:95654000-95659000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:95654400-95655000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr5:95654400-95655800	Enhancers	Psoas Muscle	Psoas
21	chr5:95654400-95656200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:95654400-95656200	Weak transcription	Osteobl	bone
23	chr5:95654400-95656400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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