Variant report

Variant	rs73134336
Chromosome Location	chr5:95666497-95666498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95295913..95298575-chr5:95662925..95666716,4	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PCSK1-4	chr5:95666245-95666687	NONHSAT102889

Variant related genes	Relation type
ENSG00000251314	Chromatin interaction
ENSG00000118985	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs4594875	0.86[AFR][1000 genomes]
rs57207208	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57420820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58062605	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58558890	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58692306	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59091392	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59443370	0.86[AFR][1000 genomes]
rs61032727	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134324	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134341	0.86[AFR][1000 genomes]
rs73134346	0.86[AFR][1000 genomes]
rs73134351	0.86[AFR][1000 genomes]
rs73134353	0.86[AFR][1000 genomes]
rs73136598	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138325	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138330	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138335	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138353	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138361	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138362	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138363	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138367	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138370	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138373	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138393	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144658	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144659	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144670	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144673	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144675	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144682	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144684	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144687	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727999	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95658400-95668600	Weak transcription	Aorta	Aorta
2	chr5:95659000-95666600	Weak transcription	HepG2	liver
3	chr5:95659000-95667600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:95661000-95668400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:95661000-95671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:95663600-95667600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:95663600-95668200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:95663800-95667800	Enhancers	Osteobl	bone
9	chr5:95663800-95668000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:95663800-95671400	Weak transcription	GM12878-XiMat	blood
11	chr5:95664000-95668000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:95664200-95668200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr5:95664800-95666800	Enhancers	HSMM	muscle
14	chr5:95665000-95667200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:95665000-95667400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:95665000-95667400	Enhancers	NHDF-Ad	bronchial
17	chr5:95665000-95667800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr5:95665000-95668000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:95665200-95667000	Enhancers	Fetal Brain Male	brain
20	chr5:95665200-95667400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:95665200-95667600	Enhancers	HMEC	breast
22	chr5:95665400-95668400	Weak transcription	HSMMtube	muscle
23	chr5:95665400-95668600	Weak transcription	Left Ventricle	heart
24	chr5:95665400-95671800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:95666000-95667200	Enhancers	Adipose Nuclei	Adipose
26	chr5:95666000-95667600	Enhancers	A549	lung
27	chr5:95666000-95667800	Enhancers	NHLF	lung
28	chr5:95666000-95668000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr5:95666200-95668000	Enhancers	Liver	Liver
30	chr5:95666200-95671200	Weak transcription	NHEK	skin
31	chr5:95666400-95666600	Enhancers	Right Atrium	heart
32	chr5:95666400-95667200	Enhancers	Brain Substantia Nigra	brain
33	chr5:95666400-95667200	Enhancers	Fetal Kidney	kidney
34	chr5:95666400-95667200	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr5:95666400-95667800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr5:95666400-95668000	Enhancers	Primary monocytes fromperipheralblood	blood

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