Variant report

Variant	rs7727999
Chromosome Location	chr5:95598028-95598029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95595479..95598256-chr5:95600946..95602576,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs4594875	0.88[YRI][hapmap]
rs57207208	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57420820	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58062605	1.00[AMR][1000 genomes]
rs58558890	1.00[AMR][1000 genomes]
rs58692306	1.00[AMR][1000 genomes]
rs59091392	1.00[AMR][1000 genomes]
rs61032727	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134324	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134332	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134336	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73136598	1.00[AMR][1000 genomes]
rs73138325	1.00[AMR][1000 genomes]
rs73138330	1.00[AMR][1000 genomes]
rs73138335	1.00[AMR][1000 genomes]
rs73138353	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138361	1.00[AMR][1000 genomes]
rs73138362	1.00[AMR][1000 genomes]
rs73138363	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138367	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138370	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138373	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138391	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138393	1.00[AMR][1000 genomes]
rs73144658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144659	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144661	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144668	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144670	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144673	1.00[AMR][1000 genomes]
rs73144675	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144682	1.00[AMR][1000 genomes]
rs73144684	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144687	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95595400-95598600	Weak transcription	Pancreas	Pancrea
2	chr5:95595400-95598800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:95595400-95603800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:95595400-95614800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr5:95595600-95601200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:95596000-95601800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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