Variant report

Variant	rs73144659
Chromosome Location	chr5:95624667-95624668
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs4594875	0.82[AFR][1000 genomes]
rs57207208	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57420820	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58062605	1.00[AMR][1000 genomes]
rs58558890	1.00[AMR][1000 genomes]
rs58692306	1.00[AMR][1000 genomes]
rs59091392	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59443370	0.82[AFR][1000 genomes]
rs61032727	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134324	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134332	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134336	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134341	0.82[AFR][1000 genomes]
rs73134346	0.82[AFR][1000 genomes]
rs73134351	0.82[AFR][1000 genomes]
rs73134353	0.82[AFR][1000 genomes]
rs73136598	1.00[AMR][1000 genomes]
rs73138325	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138330	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138335	1.00[AMR][1000 genomes]
rs73138353	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138361	1.00[AMR][1000 genomes]
rs73138362	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138363	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138367	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138370	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138373	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138391	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138393	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144658	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144661	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144668	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144670	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144673	1.00[AMR][1000 genomes]
rs73144675	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144682	1.00[AMR][1000 genomes]
rs73144684	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144687	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7727999	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95612600-95632400	Weak transcription	Aorta	Aorta
2	chr5:95617400-95625200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:95617400-95628600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:95617400-95637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr5:95617800-95628400	Weak transcription	NHEK	skin
6	chr5:95622800-95625200	Enhancers	Hela-S3	cervix
7	chr5:95623000-95625000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:95623200-95625600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:95623400-95624800	Enhancers	Osteobl	bone
10	chr5:95623400-95625000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:95623400-95626000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:95623600-95624800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr5:95623600-95624800	Enhancers	Liver	Liver
14	chr5:95623600-95624800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr5:95623600-95625000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:95623600-95625000	Enhancers	HMEC	breast
17	chr5:95623800-95624800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr5:95623800-95624800	Enhancers	Adipose Nuclei	Adipose
19	chr5:95623800-95624800	Enhancers	HSMM	muscle
20	chr5:95623800-95625200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:95623800-95625600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr5:95624600-95628600	Weak transcription	HepG2	liver
23	chr5:95624600-95629800	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links