Variant report

Variant	rs58062605
Chromosome Location	chr5:95544240-95544241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13359670	1.00[AMR][1000 genomes]
rs4594875	0.86[AFR][1000 genomes]
rs57207208	1.00[AMR][1000 genomes]
rs57420820	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58558890	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58692306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59091392	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59443370	0.95[AFR][1000 genomes]
rs61032727	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134324	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134332	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134336	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73134341	0.95[AFR][1000 genomes]
rs73134346	0.95[AFR][1000 genomes]
rs73134351	0.95[AFR][1000 genomes]
rs73134353	0.95[AFR][1000 genomes]
rs73136598	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138325	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138330	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138335	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138353	1.00[AMR][1000 genomes]
rs73138361	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138362	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138363	1.00[AMR][1000 genomes]
rs73138367	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138370	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138373	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138391	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73138393	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144658	1.00[AMR][1000 genomes]
rs73144659	1.00[AMR][1000 genomes]
rs73144661	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144668	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144670	1.00[AMR][1000 genomes]
rs73144673	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144675	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144682	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144684	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73144687	1.00[AMR][1000 genomes]
rs7727999	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv882390	chr5:95486940-95591580	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830410	chr5:95505799-95666310	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95533000-95555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:95536000-95550600	Weak transcription	Pancreas	Pancrea
3	chr5:95542000-95548600	ZNF genes & repeats	Liver	Liver
4	chr5:95544200-95545200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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