Variant report

Variant	rs73416213
Chromosome Location	chr9:15737186-15737187
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15732005..15734234-chr9:15736903..15738825,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11999303	1.00[EUR][1000 genomes]
rs12005062	1.00[EUR][1000 genomes]
rs12005485	1.00[EUR][1000 genomes]
rs12005521	1.00[EUR][1000 genomes]
rs12685963	1.00[EUR][1000 genomes]
rs1396705	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16933504	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16933544	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16933593	0.82[AFR][1000 genomes]
rs16933603	0.82[AFR][1000 genomes]
rs16933626	0.82[AFR][1000 genomes]
rs34816651	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59761231	0.81[ASN][1000 genomes]
rs60572069	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6474950	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs6474968	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7022810	0.84[ASN][1000 genomes]
rs7025415	0.80[AFR][1000 genomes]
rs7026090	1.00[EUR][1000 genomes]
rs7026629	0.80[AFR][1000 genomes]
rs7029410	1.00[EUR][1000 genomes]
rs7032595	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7035048	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7040071	1.00[EUR][1000 genomes]
rs7040549	1.00[EUR][1000 genomes]
rs7040580	1.00[EUR][1000 genomes]
rs7048479	0.81[AFR][1000 genomes]
rs73416209	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73416233	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73416254	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73416261	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73416267	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73416285	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73418137	0.82[AFR][1000 genomes]
rs7847946	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7854094	0.88[ASN][1000 genomes]
rs7856304	0.80[AFR][1000 genomes]
rs7861533	1.00[EUR][1000 genomes]
rs7865705	0.82[AFR][1000 genomes]
rs7866699	1.00[EUR][1000 genomes]
rs7867018	1.00[EUR][1000 genomes]
rs7869609	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7870166	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7870244	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7873842	0.82[AFR][1000 genomes]
rs7875957	0.81[ASN][1000 genomes]
rs906798	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv892634	chr9:15696501-15746168	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv892635	chr9:15731775-15876507	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15679800-15746800	Weak transcription	Ovary	ovary
2	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
3	chr9:15715200-15746200	Weak transcription	Left Ventricle	heart
4	chr9:15718000-15749600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:15718600-15746600	Weak transcription	Thymus	Thymus
6	chr9:15729000-15746800	Weak transcription	Fetal Thymus	thymus
7	chr9:15733200-15739000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:15734800-15738400	Enhancers	Fetal Lung	lung
9	chr9:15735400-15738000	Weak transcription	HSMMtube	muscle
10	chr9:15735800-15737400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:15736000-15737400	Weak transcription	Fetal Heart	heart
12	chr9:15736000-15737800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:15736000-15739200	Weak transcription	HSMM	muscle
14	chr9:15736000-15740000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:15736200-15737800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:15736200-15737800	Weak transcription	HUVEC	blood vessel
17	chr9:15736200-15738000	Weak transcription	NHDF-Ad	bronchial
18	chr9:15736200-15738400	Weak transcription	A549	lung
19	chr9:15736200-15739000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:15736400-15737600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr9:15736400-15737600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:15736400-15738600	Weak transcription	NHLF	lung
23	chr9:15736600-15738000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:15736600-15739000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:15736600-15739000	Weak transcription	Hela-S3	cervix
26	chr9:15736600-15739200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:15736800-15737200	Weak transcription	Osteobl	bone
28	chr9:15737000-15739000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr9:15737000-15754000	Weak transcription	Gastric	stomach

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