Variant report

Variant	rs73855362
Chromosome Location	chr3:105596145-105596146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:105586396..105588232-chr3:105595370..105598050,2	MCF-7	breast:
2	chr3:105595423..105598244-chr3:105600923..105603422,2	K562	blood:
3	chr3:105594821..105597024-chr3:105599746..105602672,2	K562	blood:

Variant related genes	Relation type
ENSG00000114423	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs55857799	1.00[AMR][1000 genomes]
rs55949717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56004331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56072602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122972	1.00[AMR][1000 genomes]
rs56249671	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56256418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56696279	1.00[AMR][1000 genomes]
rs57184464	1.00[AMR][1000 genomes]
rs58846261	1.00[AMR][1000 genomes]
rs58991769	1.00[AMR][1000 genomes]
rs59294274	1.00[AMR][1000 genomes]
rs59347770	1.00[AMR][1000 genomes]
rs59577696	1.00[AMR][1000 genomes]
rs59924993	1.00[AMR][1000 genomes]
rs61230240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61452551	1.00[AMR][1000 genomes]
rs73854356	1.00[AMR][1000 genomes]
rs73854359	1.00[AMR][1000 genomes]
rs73854361	1.00[AMR][1000 genomes]
rs73854378	1.00[AMR][1000 genomes]
rs73854385	1.00[AMR][1000 genomes]
rs73854389	1.00[AMR][1000 genomes]
rs73854390	1.00[AMR][1000 genomes]
rs73854392	1.00[AMR][1000 genomes]
rs73854393	1.00[AMR][1000 genomes]
rs73854395	1.00[AMR][1000 genomes]
rs73854396	1.00[AMR][1000 genomes]
rs73854397	1.00[AMR][1000 genomes]
rs73854402	1.00[AMR][1000 genomes]
rs73854884	1.00[AMR][1000 genomes]
rs73854886	1.00[AMR][1000 genomes]
rs73854889	1.00[AMR][1000 genomes]
rs73854892	1.00[AMR][1000 genomes]
rs73855350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855352	1.00[AMR][1000 genomes]
rs73855363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855365	1.00[AMR][1000 genomes]
rs73855366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857223	1.00[AMR][1000 genomes]
rs73857224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105589000-105601200	Weak transcription	Aorta	Aorta
2	chr3:105589000-105601200	Weak transcription	Thymus	Thymus
3	chr3:105589000-105601200	Weak transcription	NH-A	brain
4	chr3:105589200-105601200	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:105589400-105596400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:105589400-105596800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:105590800-105597000	Weak transcription	Fetal Lung	lung
8	chr3:105595000-105596200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr3:105595200-105596400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr3:105595200-105596400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:105595200-105597200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr3:105595200-105597200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr3:105595400-105596600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr3:105595400-105597400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr3:105595400-105597600	Enhancers	Primary T cells from cord blood	blood
16	chr3:105595600-105596600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr3:105595600-105596600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:105595600-105596800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:105595600-105597400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:105595600-105597400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:105595600-105597400	Enhancers	Osteobl	bone
22	chr3:105595800-105596200	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr3:105595800-105596200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr3:105595800-105596200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr3:105595800-105596200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:105595800-105596200	Enhancers	Fetal Kidney	kidney
27	chr3:105595800-105596200	Flanking Active TSS	GM12878-XiMat	blood
28	chr3:105595800-105596400	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr3:105595800-105596400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr3:105595800-105596400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr3:105595800-105596600	Enhancers	Primary B cells from peripheral blood	blood
32	chr3:105595800-105596600	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr3:105595800-105597000	Weak transcription	Small Intestine	intestine
34	chr3:105595800-105597600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:105595800-105599400	Weak transcription	Stomach Mucosa	stomach
36	chr3:105596000-105596200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr3:105596000-105596200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr3:105596000-105596200	Enhancers	Right Atrium	heart
39	chr3:105596000-105596400	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr3:105596000-105596400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:105596000-105596400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
42	chr3:105596000-105596400	Enhancers	Dnd41	blood
43	chr3:105596000-105596400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr3:105596000-105596600	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr3:105596000-105596600	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr3:105596000-105597200	Enhancers	Primary T killer memory cells from peripheral blood	blood

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