The 2.0 version of rSNPBase

Variant report

Variant rs73857223
Chromosome Location chr3:105553995-105553996
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:105483200-105555200 Weak transcription Placenta Placenta
2 chr3:105511400-105566400 Weak transcription Aorta Aorta
3 chr3:105532200-105563000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr3:105533600-105560600 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr3:105533800-105570000 Weak transcription Dnd41 blood
6 chr3:105534200-105566200 Weak transcription Brain Germinal Matrix brain
7 chr3:105540800-105569600 Weak transcription Fetal Thymus thymus
8 chr3:105541000-105554400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr3:105542200-105554000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr3:105542600-105555400 Weak transcription Brain Angular Gyrus brain
11 chr3:105542600-105566000 Weak transcription Fetal Stomach stomach
12 chr3:105542800-105554400 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr3:105543000-105555600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
14 chr3:105543400-105555800 Weak transcription HepG2 liver
15 chr3:105543400-105560800 Weak transcription Fetal Muscle Trunk muscle
16 chr3:105543400-105581200 Weak transcription Gastric stomach
17 chr3:105543600-105557200 Weak transcription Fetal Intestine Large intestine
18 chr3:105543800-105571000 Weak transcription Lung lung
19 chr3:105544000-105554400 Weak transcription Fetal Lung lung
20 chr3:105544200-105554400 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr3:105544200-105559200 Weak transcription Breast Myoepithelial Primary Cells Breast
22 chr3:105544200-105584600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr3:105546600-105586200 Weak transcription Esophagus oesophagus
24 chr3:105546800-105560800 Weak transcription Fetal Muscle Leg muscle
25 chr3:105547200-105554600 Weak transcription Duodenum Mucosa Duodenum
26 chr3:105547200-105554800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr3:105547200-105554800 Weak transcription Ovary ovary
28 chr3:105547200-105555000 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr3:105547200-105557400 Weak transcription Fetal Intestine Small intestine
30 chr3:105547400-105554400 Weak transcription NH-A brain
31 chr3:105547400-105557200 Weak transcription iPS-20b Cell Line embryonic stem cell
32 chr3:105547800-105554600 Weak transcription HMEC breast
33 chr3:105547800-105554800 Enhancers Primary T helper naive cells fromperipheralblood blood
34 chr3:105547800-105555400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr3:105547800-105557400 Weak transcription HUES64 Cell Line embryonic stem cell
36 chr3:105548400-105561200 Weak transcription K562 blood
37 chr3:105548400-105561400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr3:105548600-105559600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr3:105549000-105554600 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr3:105549000-105555000 Weak transcription Right Ventricle heart
41 chr3:105549000-105560800 Weak transcription Fetal Adrenal Gland Adrenal Gland
42 chr3:105549000-105571800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr3:105549200-105555400 Weak transcription Psoas Muscle Psoas
44 chr3:105549200-105564400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr3:105549400-105557200 Weak transcription iPS-18 Cell Line embryonic stem cell
46 chr3:105549600-105558000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr3:105549800-105554600 Weak transcription Skeletal Muscle Male skeletal muscle
48 chr3:105549800-105554600 Weak transcription Stomach Mucosa stomach
49 chr3:105549800-105556000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
50 chr3:105550000-105562600 Weak transcription HUVEC blood vessel

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Last update: Aug 31, 2015