The 2.0 version of rSNPBase

Variant report

Variant rs58991769
Chromosome Location chr3:105546379-105546380
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:105483200-105555200 Weak transcription Placenta Placenta
2 chr3:105505000-105548200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr3:105511400-105566400 Weak transcription Aorta Aorta
4 chr3:105521200-105546800 Weak transcription ES-I3 Cell Line embryonic stem cell
5 chr3:105528400-105553600 Weak transcription Fetal Kidney kidney
6 chr3:105529000-105546600 Weak transcription Primary T regulatory cells fromperipheralblood blood
7 chr3:105531400-105546600 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr3:105531600-105546400 Weak transcription HUES6 Cell Line embryonic stem cell
9 chr3:105532200-105563000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
10 chr3:105533600-105560600 Weak transcription Primary hematopoietic stem cells short term culture blood
11 chr3:105533800-105570000 Weak transcription Dnd41 blood
12 chr3:105534200-105566200 Weak transcription Brain Germinal Matrix brain
13 chr3:105534400-105546600 Weak transcription iPS-20b Cell Line embryonic stem cell
14 chr3:105535600-105553800 Weak transcription Fetal Brain Male brain
15 chr3:105537800-105546800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr3:105539400-105551600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr3:105540800-105569600 Weak transcription Fetal Thymus thymus
18 chr3:105541000-105554400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr3:105541400-105548000 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr3:105541800-105553600 Weak transcription Fetal Brain Female brain
21 chr3:105542200-105546400 Weak transcription Pancreatic Islets Pancreatic Islet
22 chr3:105542200-105553600 Weak transcription Liver Liver
23 chr3:105542200-105554000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
24 chr3:105542400-105548200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr3:105542600-105548200 Weak transcription Pancreas Pancrea
26 chr3:105542600-105555400 Weak transcription Brain Angular Gyrus brain
27 chr3:105542600-105566000 Weak transcription Fetal Stomach stomach
28 chr3:105542800-105546400 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr3:105542800-105546800 Weak transcription Brain Hippocampus Middle brain
30 chr3:105542800-105554400 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr3:105543000-105546400 Weak transcription Rectal Smooth Muscle rectum
32 chr3:105543000-105546800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr3:105543000-105555600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
34 chr3:105543200-105546400 Weak transcription Right Atrium heart
35 chr3:105543200-105546400 Weak transcription HUVEC blood vessel
36 chr3:105543200-105546600 Weak transcription ES-WA7 Cell Line embryonic stem cell
37 chr3:105543200-105546600 Weak transcription HUES48 Cell Line embryonic stem cell
38 chr3:105543200-105548400 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr3:105543200-105550200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr3:105543200-105551600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr3:105543400-105546400 Weak transcription Ovary ovary
42 chr3:105543400-105546800 Weak transcription Psoas Muscle Psoas
43 chr3:105543400-105546800 Weak transcription Rectal Mucosa Donor 29 rectum
44 chr3:105543400-105546800 Weak transcription Stomach Smooth Muscle stomach
45 chr3:105543400-105546800 Weak transcription NHEK skin
46 chr3:105543400-105548200 Weak transcription Colon Smooth Muscle Colon
47 chr3:105543400-105548800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr3:105543400-105548800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr3:105543400-105555800 Weak transcription HepG2 liver
50 chr3:105543400-105560800 Weak transcription Fetal Muscle Trunk muscle

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Last update: Aug 31, 2015