The 2.0 version of rSNPBase

Variant report

Variant rs56249671
Chromosome Location chr3:105557425-105557426
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:108 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:105511400-105566400 Weak transcription Aorta Aorta
2 chr3:105532200-105563000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr3:105533600-105560600 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr3:105533800-105570000 Weak transcription Dnd41 blood
5 chr3:105534200-105566200 Weak transcription Brain Germinal Matrix brain
6 chr3:105540800-105569600 Weak transcription Fetal Thymus thymus
7 chr3:105542600-105566000 Weak transcription Fetal Stomach stomach
8 chr3:105543400-105560800 Weak transcription Fetal Muscle Trunk muscle
9 chr3:105543400-105581200 Weak transcription Gastric stomach
10 chr3:105543800-105571000 Weak transcription Lung lung
11 chr3:105544200-105559200 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr3:105544200-105584600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr3:105546600-105586200 Weak transcription Esophagus oesophagus
14 chr3:105546800-105560800 Weak transcription Fetal Muscle Leg muscle
15 chr3:105548400-105561200 Weak transcription K562 blood
16 chr3:105548400-105561400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
17 chr3:105548600-105559600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr3:105549000-105560800 Weak transcription Fetal Adrenal Gland Adrenal Gland
19 chr3:105549000-105571800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr3:105549200-105564400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr3:105549600-105558000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr3:105550000-105562600 Weak transcription HUVEC blood vessel
23 chr3:105550000-105569600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr3:105551800-105560800 Weak transcription Primary hematopoietic stem cells blood
25 chr3:105553400-105564000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
26 chr3:105553800-105557600 Weak transcription H1 Cell Line embryonic stem cell
27 chr3:105554000-105566400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr3:105555000-105561400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr3:105555000-105562800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr3:105555000-105562800 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr3:105555200-105557600 Enhancers Muscle Satellite Cultured Cells --
32 chr3:105555200-105558400 Strong transcription Placenta Placenta
33 chr3:105555200-105561200 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr3:105555200-105566400 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr3:105555600-105558000 Weak transcription Spleen Spleen
36 chr3:105555800-105560000 Weak transcription Left Ventricle heart
37 chr3:105555800-105564400 Weak transcription HMEC breast
38 chr3:105555800-105565800 Weak transcription Right Atrium heart
39 chr3:105555800-105576600 Weak transcription Psoas Muscle Psoas
40 chr3:105556200-105558000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
41 chr3:105556200-105559600 Genic enhancers Osteobl bone
42 chr3:105556200-105560600 Weak transcription Primary T helper naive cells from peripheral blood blood
43 chr3:105556200-105560800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr3:105556200-105561200 Weak transcription Fetal Brain Male brain
45 chr3:105556200-105561600 Weak transcription Brain Substantia Nigra brain
46 chr3:105556200-105562800 Weak transcription Brain Hippocampus Middle brain
47 chr3:105556200-105566600 Weak transcription Brain Inferior Temporal Lobe brain
48 chr3:105556200-105570200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr3:105556200-105571600 Weak transcription Monocytes-CD14+_RO01746 blood
50 chr3:105556200-105579000 Weak transcription Stomach Mucosa stomach

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Last update: Aug 31, 2015