Variant report

Variant	rs73855363
Chromosome Location	chr3:105600677-105600678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105594821..105597024-chr3:105599746..105602672,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs55857799	1.00[AMR][1000 genomes]
rs55949717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56004331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56072602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122972	1.00[AMR][1000 genomes]
rs56249671	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56256418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56696279	1.00[AMR][1000 genomes]
rs57184464	1.00[AMR][1000 genomes]
rs58846261	1.00[AMR][1000 genomes]
rs58991769	1.00[AMR][1000 genomes]
rs59294274	1.00[AMR][1000 genomes]
rs59347770	1.00[AMR][1000 genomes]
rs59577696	1.00[AMR][1000 genomes]
rs59924993	1.00[AMR][1000 genomes]
rs61230240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61452551	1.00[AMR][1000 genomes]
rs73854359	1.00[AMR][1000 genomes]
rs73854361	1.00[AMR][1000 genomes]
rs73854378	1.00[AMR][1000 genomes]
rs73854385	1.00[AMR][1000 genomes]
rs73854389	1.00[AMR][1000 genomes]
rs73854390	1.00[AMR][1000 genomes]
rs73854392	1.00[AMR][1000 genomes]
rs73854393	1.00[AMR][1000 genomes]
rs73854395	1.00[AMR][1000 genomes]
rs73854396	1.00[AMR][1000 genomes]
rs73854397	1.00[AMR][1000 genomes]
rs73854402	1.00[AMR][1000 genomes]
rs73854884	1.00[AMR][1000 genomes]
rs73854886	1.00[AMR][1000 genomes]
rs73854889	1.00[AMR][1000 genomes]
rs73854892	1.00[AMR][1000 genomes]
rs73855350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855352	1.00[AMR][1000 genomes]
rs73855362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73855365	1.00[AMR][1000 genomes]
rs73855366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857223	1.00[AMR][1000 genomes]
rs73857224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105589000-105601200	Weak transcription	Aorta	Aorta
2	chr3:105589000-105601200	Weak transcription	Thymus	Thymus
3	chr3:105589000-105601200	Weak transcription	NH-A	brain
4	chr3:105589200-105601200	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:105596200-105601200	Weak transcription	Fetal Kidney	kidney
6	chr3:105596400-105601200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:105596600-105601200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr3:105596600-105601200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:105596600-105601200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr3:105597000-105601200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:105597200-105601200	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr3:105597200-105601200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:105597200-105601200	Weak transcription	NHLF	lung
14	chr3:105597200-105601400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:105597400-105601200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:105597400-105601200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr3:105597400-105601200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:105597400-105601200	Weak transcription	Osteobl	bone
19	chr3:105597600-105601200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:105597600-105601200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:105597600-105601200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:105597600-105601200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:105597600-105601200	Weak transcription	Fetal Lung	lung
24	chr3:105597600-105601400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr3:105597600-105601400	Weak transcription	Primary T cells from cord blood	blood
26	chr3:105597600-105601400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr3:105599200-105601200	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr3:105600000-105601200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:105600200-105601400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:105600400-105601200	Weak transcription	Stomach Mucosa	stomach
31	chr3:105600600-105601000	Enhancers	A549	lung

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