Variant report

Variant	rs74105496
Chromosome Location	chr13:98145703-98145704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs184730	0.95[EUR][1000 genomes]
rs187012	0.95[EUR][1000 genomes]
rs2769284	0.95[EUR][1000 genomes]
rs2769285	0.95[EUR][1000 genomes]
rs2769286	0.89[EUR][1000 genomes]
rs2769288	0.95[EUR][1000 genomes]
rs2769290	0.95[EUR][1000 genomes]
rs2770217	0.95[EUR][1000 genomes]
rs2770218	0.95[EUR][1000 genomes]
rs2770223	0.95[EUR][1000 genomes]
rs2770224	0.89[EUR][1000 genomes]
rs2770228	0.95[EUR][1000 genomes]
rs349112	0.89[EUR][1000 genomes]
rs349113	0.95[EUR][1000 genomes]
rs349117	0.95[EUR][1000 genomes]
rs349118	0.95[EUR][1000 genomes]
rs349119	0.95[EUR][1000 genomes]
rs349122	0.95[EUR][1000 genomes]
rs349124	0.95[EUR][1000 genomes]
rs349125	0.95[EUR][1000 genomes]
rs349126	0.95[EUR][1000 genomes]
rs381224	0.81[EUR][1000 genomes]
rs384217	0.95[EUR][1000 genomes]
rs471754	0.95[EUR][1000 genomes]
rs55694844	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56057629	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57104501	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57491525	0.95[EUR][1000 genomes]
rs59446249	0.95[EUR][1000 genomes]
rs7331217	0.95[EUR][1000 genomes]
rs7331520	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7331537	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7331838	0.80[AFR][1000 genomes]
rs7335777	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs74105498	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74108409	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs787468	0.95[EUR][1000 genomes]
rs805111	0.89[EUR][1000 genomes]
rs9300418	0.95[EUR][1000 genomes]
rs9300424	0.95[EUR][1000 genomes]
rs9582141	0.95[EUR][1000 genomes]
rs9584588	0.80[AFR][1000 genomes]
rs9584592	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9584597	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1139	chr13:98133793-98178130	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98143200-98145800	Enhancers	HepG2	liver
2	chr13:98144200-98148200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr13:98145600-98146000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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