Variant report

Variant	rs2770224
Chromosome Location	chr13:98197561-98197562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs12184576	1.00[CEU][hapmap]
rs13378494	1.00[ASN][1000 genomes]
rs184730	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs187012	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769284	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769285	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769286	0.89[EUR][1000 genomes]
rs2769288	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769290	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770217	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770218	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770223	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770228	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34575456	1.00[ASN][1000 genomes]
rs349112	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349113	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349117	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349118	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349119	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349121	1.00[ASN][1000 genomes]
rs349122	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349124	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349125	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349126	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368997	1.00[ASN][1000 genomes]
rs381224	0.81[EUR][1000 genomes]
rs384217	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471754	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55694844	0.95[EUR][1000 genomes]
rs56057629	0.95[EUR][1000 genomes]
rs57104501	0.95[EUR][1000 genomes]
rs57491525	0.95[EUR][1000 genomes]
rs59446249	0.95[EUR][1000 genomes]
rs7318655	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7331217	0.95[EUR][1000 genomes]
rs7331520	0.95[EUR][1000 genomes]
rs7331537	0.95[EUR][1000 genomes]
rs7335777	0.95[EUR][1000 genomes]
rs73564120	1.00[ASN][1000 genomes]
rs73564126	1.00[ASN][1000 genomes]
rs73564135	1.00[ASN][1000 genomes]
rs73564148	1.00[ASN][1000 genomes]
rs74105496	0.89[EUR][1000 genomes]
rs74105498	0.95[EUR][1000 genomes]
rs74108409	0.89[EUR][1000 genomes]
rs787468	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805111	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300411	1.00[CEU][hapmap]
rs9300412	1.00[CEU][hapmap]
rs9300418	0.95[EUR][1000 genomes]
rs9300424	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9582131	1.00[CEU][hapmap]
rs9582133	1.00[CEU][hapmap]
rs9582135	1.00[CEU][hapmap]
rs9582141	0.95[EUR][1000 genomes]
rs9582144	1.00[ASN][1000 genomes]
rs9582147	1.00[ASN][1000 genomes]
rs9584572	1.00[CEU][hapmap]
rs9584573	1.00[CEU][hapmap]
rs9584575	1.00[CEU][hapmap]
rs9584578	1.00[CEU][hapmap]
rs9584579	1.00[CEU][hapmap]
rs9584580	1.00[CEU][hapmap]
rs9584583	1.00[CEU][hapmap]
rs9584592	0.95[EUR][1000 genomes]
rs9584595	1.00[ASN][1000 genomes]
rs9584596	1.00[ASN][1000 genomes]
rs9584597	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584599	1.00[ASN][1000 genomes]
rs9584600	1.00[ASN][1000 genomes]
rs9584615	1.00[ASN][1000 genomes]
rs9584626	1.00[ASN][1000 genomes]
rs9805408	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98193400-98197600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:98195800-98201000	Weak transcription	Right Atrium	heart
3	chr13:98196400-98200600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:98196800-98200600	Weak transcription	NHDF-Ad	bronchial
5	chr13:98196800-98201000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:98197000-98201000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:98197200-98200800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:98197400-98198000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr13:98197400-98198000	Enhancers	Spleen	Spleen

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