Variant report
| Variant | rs9584573 |
|---|---|
| Chromosome Location | chr13:98065062-98065063 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000125249 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10161600 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10161693 | 0.92[EUR][1000 genomes] |
| rs12100327 | 1.00[EUR][1000 genomes] |
| rs12184576 | 0.83[AMR][1000 genomes] |
| rs13378123 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13378459 | 1.00[EUR][1000 genomes] |
| rs13378500 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13378554 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13378832 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13378938 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs45560245 | 0.83[AMR][1000 genomes] |
| rs55935003 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74105181 | 1.00[EUR][1000 genomes] |
| rs9300411 | 0.83[AMR][1000 genomes] |
| rs9582131 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9582133 | 0.83[AMR][1000 genomes] |
| rs9582134 | 0.83[AMR][1000 genomes] |
| rs9584567 | 1.00[EUR][1000 genomes] |
| rs9584570 | 1.00[EUR][1000 genomes] |
| rs9584572 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9584574 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9584575 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs9584576 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9584579 | 0.83[AMR][1000 genomes] |
| rs9584582 | 0.83[AMR][1000 genomes] |
| rs9584583 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832694 | chr13:97930561-98137882 | ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1038798 | chr13:98008467-98068130 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:98063600-98065200 | Enhancers | NHDF-Ad | bronchial |
| 2 | chr13:98064800-98065200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
