Variant report

Variant	rs13378938
Chromosome Location	chr13:98048828-98048829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98047283..98049852-chr13:98064242..98066608,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10161600	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10161693	0.92[EUR][1000 genomes]
rs12100327	1.00[EUR][1000 genomes]
rs12184576	1.00[AMR][1000 genomes]
rs13378123	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13378459	1.00[EUR][1000 genomes]
rs13378494	0.83[AMR][1000 genomes]
rs13378500	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13378554	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13378832	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45560245	1.00[AMR][1000 genomes]
rs55935003	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318655	0.83[AMR][1000 genomes]
rs73564148	0.83[AMR][1000 genomes]
rs74105120	1.00[ASN][1000 genomes]
rs74105181	1.00[EUR][1000 genomes]
rs9300411	1.00[AMR][1000 genomes]
rs9582131	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9582132	0.83[AMR][1000 genomes]
rs9582133	1.00[AMR][1000 genomes]
rs9582134	1.00[AMR][1000 genomes]
rs9582136	0.83[AMR][1000 genomes]
rs9582144	0.83[AMR][1000 genomes]
rs9584567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584570	1.00[EUR][1000 genomes]
rs9584572	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584573	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584574	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9584575	0.92[EUR][1000 genomes]
rs9584576	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9584579	1.00[AMR][1000 genomes]
rs9584582	1.00[AMR][1000 genomes]
rs9584583	1.00[AMR][1000 genomes]
rs9584595	0.83[AMR][1000 genomes]
rs9584596	0.83[AMR][1000 genomes]
rs9584599	0.83[AMR][1000 genomes]
rs9584615	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
2	chr13:98028000-98056400	Weak transcription	Psoas Muscle	Psoas
3	chr13:98038600-98049400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr13:98039600-98054400	Weak transcription	Primary T cells from cord blood	blood
5	chr13:98040000-98049800	Weak transcription	Lung	lung
6	chr13:98040200-98049000	Weak transcription	Brain Angular Gyrus	brain
7	chr13:98040200-98049400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr13:98041400-98049000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr13:98041400-98049200	Weak transcription	Colon Smooth Muscle	Colon
10	chr13:98041400-98050200	Weak transcription	Fetal Stomach	stomach
11	chr13:98041800-98050800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr13:98042000-98049000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr13:98042000-98052800	Weak transcription	Fetal Muscle Leg	muscle
14	chr13:98044600-98049000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr13:98044600-98049000	Weak transcription	Brain Substantia Nigra	brain
16	chr13:98044600-98049400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr13:98044600-98059400	Weak transcription	Left Ventricle	heart
18	chr13:98045400-98059400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr13:98045600-98049200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr13:98046600-98049400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr13:98047000-98049000	Weak transcription	Fetal Lung	lung
22	chr13:98047200-98049200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr13:98048200-98050200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr13:98048400-98049200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr13:98048400-98052200	Weak transcription	NHLF	lung
26	chr13:98048800-98049200	Enhancers	Duodenum Smooth Muscle	Duodenum

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