Variant report

Variant	rs9584579
Chromosome Location	chr13:98094729-98094730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:98093541..98095076-chr13:98218709..98220541,2	MCF-7	breast:
2	chr13:98088366..98091907-chr13:98092585..98097383,6	K562	blood:
3	chr13:98084623..98087568-chr13:98094102..98096230,2	MCF-7	breast:
4	chr13:98071956..98074377-chr13:98092594..98095295,2	K562	blood:

Variant related genes	Relation type
ENSG00000125249	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10161600	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12100323	1.00[EUR][1000 genomes]
rs12184576	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13378123	0.83[AMR][1000 genomes]
rs13378494	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13378500	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13378554	0.83[AMR][1000 genomes]
rs13378832	0.83[AMR][1000 genomes]
rs13378938	1.00[AMR][1000 genomes]
rs16954162	0.93[EUR][1000 genomes]
rs34575456	0.87[EUR][1000 genomes]
rs45560245	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55935003	0.83[AMR][1000 genomes]
rs60500694	1.00[EUR][1000 genomes]
rs7318655	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73564120	0.93[EUR][1000 genomes]
rs73564126	0.93[EUR][1000 genomes]
rs73564135	0.93[EUR][1000 genomes]
rs73564148	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9300411	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300412	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9300413	1.00[EUR][1000 genomes]
rs9582131	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9582132	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582133	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582135	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[EUR][1000 genomes]
rs9582136	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9582137	0.93[EUR][1000 genomes]
rs9582138	0.80[EUR][1000 genomes]
rs9582139	0.80[EUR][1000 genomes]
rs9582144	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9582147	0.86[EUR][1000 genomes]
rs9584572	0.83[AMR][1000 genomes]
rs9584573	0.83[AMR][1000 genomes]
rs9584574	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584575	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9584576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584577	1.00[EUR][1000 genomes]
rs9584578	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9584580	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[EUR][1000 genomes]
rs9584581	1.00[EUR][1000 genomes]
rs9584582	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584583	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584595	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9584596	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9584598	0.93[EUR][1000 genomes]
rs9584599	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9584600	0.87[EUR][1000 genomes]
rs9584615	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9584626	0.87[EUR][1000 genomes]
rs9805408	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1791802	chr13:98076911-98096882	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1804050	chr13:98076911-98096882	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1794802	chr13:98076911-98106042	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1797132	chr13:98076911-98106042	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98087400-98101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:98087400-98122200	Weak transcription	Gastric	stomach
3	chr13:98087600-98101200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:98087600-98104600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:98087600-98116400	Weak transcription	Esophagus	oesophagus
6	chr13:98087600-98124400	Weak transcription	Pancreas	Pancrea
7	chr13:98088400-98095200	Weak transcription	Left Ventricle	heart
8	chr13:98088400-98098800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr13:98088400-98101000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:98088400-98101000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:98088400-98108000	Weak transcription	Fetal Thymus	thymus
12	chr13:98088400-98111600	Weak transcription	Psoas Muscle	Psoas
13	chr13:98088400-98116400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr13:98088600-98095200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr13:98088600-98095800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr13:98088600-98097000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:98088600-98112800	Weak transcription	Thymus	Thymus
18	chr13:98088600-98119600	Weak transcription	NH-A	brain
19	chr13:98088800-98105600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr13:98088800-98105600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr13:98088800-98111800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr13:98088800-98116400	Weak transcription	Fetal Intestine Small	intestine
23	chr13:98088800-98118000	Weak transcription	HMEC	breast
24	chr13:98088800-98118400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr13:98088800-98119000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr13:98089000-98100600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr13:98089000-98116400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr13:98089200-98097200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr13:98089200-98099400	Weak transcription	Primary B cells from cord blood	blood
30	chr13:98089200-98101000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr13:98089200-98105200	Weak transcription	Fetal Intestine Large	intestine
32	chr13:98089200-98111800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr13:98089200-98111800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr13:98089200-98116400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr13:98089200-98116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr13:98089200-98116400	Weak transcription	NHEK	skin
37	chr13:98089200-98126600	Weak transcription	Stomach Smooth Muscle	stomach
38	chr13:98089800-98095000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr13:98089800-98106200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr13:98089800-98107000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr13:98089800-98107600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr13:98089800-98122800	Weak transcription	Small Intestine	intestine
43	chr13:98090000-98097800	Weak transcription	Primary T cells from cord blood	blood
44	chr13:98090000-98105600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr13:98090600-98097000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr13:98090800-98094800	Weak transcription	Colon Smooth Muscle	Colon
47	chr13:98090800-98101000	Weak transcription	Ovary	ovary
48	chr13:98090800-98101600	Weak transcription	Spleen	Spleen
49	chr13:98090800-98103600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr13:98090800-98116400	Weak transcription	Aorta	Aorta

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