Variant report

Variant	rs9584580
Chromosome Location	chr13:98109395-98109396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10161693	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12100323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12100327	0.87[AMR][1000 genomes]
rs12184576	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13378459	1.00[AMR][1000 genomes]
rs13378494	0.93[EUR][1000 genomes]
rs16954162	0.93[EUR][1000 genomes]
rs34575456	0.87[EUR][1000 genomes]
rs45560245	1.00[EUR][1000 genomes]
rs60500694	1.00[EUR][1000 genomes]
rs7318655	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs73564120	0.93[EUR][1000 genomes]
rs73564126	0.93[EUR][1000 genomes]
rs73564135	0.93[EUR][1000 genomes]
rs73564148	0.93[EUR][1000 genomes]
rs74105181	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9300411	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9300412	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300413	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300414	0.86[AFR][1000 genomes]
rs9582132	1.00[EUR][1000 genomes]
rs9582133	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9582134	1.00[EUR][1000 genomes]
rs9582135	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582136	0.93[EUR][1000 genomes]
rs9582137	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9582138	0.80[EUR][1000 genomes]
rs9582139	0.80[EUR][1000 genomes]
rs9582144	0.93[EUR][1000 genomes]
rs9582147	0.86[EUR][1000 genomes]
rs9584567	1.00[AMR][1000 genomes]
rs9584570	0.87[AMR][1000 genomes]
rs9584575	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584578	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584579	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];1.00[EUR][1000 genomes]
rs9584581	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584582	1.00[EUR][1000 genomes]
rs9584583	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9584595	0.93[EUR][1000 genomes]
rs9584596	0.93[EUR][1000 genomes]
rs9584598	0.93[EUR][1000 genomes]
rs9584599	0.93[EUR][1000 genomes]
rs9584600	0.87[EUR][1000 genomes]
rs9584615	0.93[EUR][1000 genomes]
rs9584626	0.87[EUR][1000 genomes]
rs9805408	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98087400-98122200	Weak transcription	Gastric	stomach
2	chr13:98087600-98116400	Weak transcription	Esophagus	oesophagus
3	chr13:98087600-98124400	Weak transcription	Pancreas	Pancrea
4	chr13:98088400-98111600	Weak transcription	Psoas Muscle	Psoas
5	chr13:98088400-98116400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr13:98088600-98112800	Weak transcription	Thymus	Thymus
7	chr13:98088600-98119600	Weak transcription	NH-A	brain
8	chr13:98088800-98111800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr13:98088800-98116400	Weak transcription	Fetal Intestine Small	intestine
10	chr13:98088800-98118000	Weak transcription	HMEC	breast
11	chr13:98088800-98118400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:98088800-98119000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:98089000-98116400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr13:98089200-98111800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:98089200-98111800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr13:98089200-98116400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr13:98089200-98116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr13:98089200-98116400	Weak transcription	NHEK	skin
19	chr13:98089200-98126600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr13:98089800-98122800	Weak transcription	Small Intestine	intestine
21	chr13:98090800-98116400	Weak transcription	Aorta	Aorta
22	chr13:98091000-98111400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr13:98091200-98112800	Weak transcription	Right Ventricle	heart
24	chr13:98091800-98111600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr13:98091800-98116200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:98091800-98116400	Weak transcription	HUVEC	blood vessel
27	chr13:98091800-98123000	Weak transcription	HSMM	muscle
28	chr13:98092000-98110600	Weak transcription	Fetal Heart	heart
29	chr13:98092000-98111800	Weak transcription	Fetal Brain Male	brain
30	chr13:98092000-98115200	Weak transcription	HepG2	liver
31	chr13:98092000-98116400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr13:98092800-98111600	Weak transcription	Placenta	Placenta
33	chr13:98093600-98111400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr13:98095800-98112200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr13:98097400-98112400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr13:98098200-98116400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr13:98098800-98111600	Weak transcription	Brain Hippocampus Middle	brain
38	chr13:98101200-98117400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr13:98101400-98111400	Weak transcription	NHDF-Ad	bronchial
40	chr13:98101400-98111600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr13:98101400-98116400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr13:98101400-98116400	Weak transcription	Fetal Stomach	stomach
43	chr13:98101400-98116400	Weak transcription	Ovary	ovary
44	chr13:98101400-98123400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr13:98101600-98116600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr13:98101800-98111600	Weak transcription	Left Ventricle	heart
47	chr13:98101800-98116400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr13:98101800-98116800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr13:98102000-98116200	Weak transcription	Fetal Kidney	kidney
50	chr13:98102000-98116600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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