Variant report

Variant	rs9300412
Chromosome Location	chr13:98097280-98097281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:98084712..98086856-chr13:98095176..98097332,2	K562	blood:
2	chr13:98088366..98091907-chr13:98092585..98097383,6	K562	blood:
3	chr13:98086365..98087880-chr13:98096785..98099178,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125249	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10161693	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12100323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12100327	0.87[AMR][1000 genomes]
rs12184576	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13378459	1.00[AMR][1000 genomes]
rs13378494	0.93[EUR][1000 genomes]
rs16954162	0.93[EUR][1000 genomes]
rs34575456	0.87[EUR][1000 genomes]
rs45560245	1.00[EUR][1000 genomes]
rs60500694	1.00[EUR][1000 genomes]
rs7318655	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs73564120	0.93[EUR][1000 genomes]
rs73564126	0.93[EUR][1000 genomes]
rs73564135	0.93[EUR][1000 genomes]
rs73564148	0.93[EUR][1000 genomes]
rs74105181	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9300411	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9300413	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300414	0.86[AFR][1000 genomes]
rs9582132	1.00[EUR][1000 genomes]
rs9582133	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9582134	1.00[EUR][1000 genomes]
rs9582135	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582136	0.93[EUR][1000 genomes]
rs9582137	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9582138	0.80[EUR][1000 genomes]
rs9582139	0.80[EUR][1000 genomes]
rs9582144	0.93[EUR][1000 genomes]
rs9582147	0.86[EUR][1000 genomes]
rs9584567	1.00[AMR][1000 genomes]
rs9584570	0.87[AMR][1000 genomes]
rs9584575	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584578	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584579	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9584580	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584581	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584582	1.00[EUR][1000 genomes]
rs9584583	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9584595	0.93[EUR][1000 genomes]
rs9584596	0.93[EUR][1000 genomes]
rs9584598	0.93[EUR][1000 genomes]
rs9584599	0.93[EUR][1000 genomes]
rs9584600	0.87[EUR][1000 genomes]
rs9584615	0.93[EUR][1000 genomes]
rs9584626	0.87[EUR][1000 genomes]
rs9805408	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1794802	chr13:98076911-98106042	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1797132	chr13:98076911-98106042	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98087400-98101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:98087400-98122200	Weak transcription	Gastric	stomach
3	chr13:98087600-98101200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:98087600-98104600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:98087600-98116400	Weak transcription	Esophagus	oesophagus
6	chr13:98087600-98124400	Weak transcription	Pancreas	Pancrea
7	chr13:98088400-98098800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr13:98088400-98101000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:98088400-98101000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:98088400-98108000	Weak transcription	Fetal Thymus	thymus
11	chr13:98088400-98111600	Weak transcription	Psoas Muscle	Psoas
12	chr13:98088400-98116400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr13:98088600-98112800	Weak transcription	Thymus	Thymus
14	chr13:98088600-98119600	Weak transcription	NH-A	brain
15	chr13:98088800-98105600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr13:98088800-98105600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr13:98088800-98111800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr13:98088800-98116400	Weak transcription	Fetal Intestine Small	intestine
19	chr13:98088800-98118000	Weak transcription	HMEC	breast
20	chr13:98088800-98118400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr13:98088800-98119000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:98089000-98100600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr13:98089000-98116400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr13:98089200-98099400	Weak transcription	Primary B cells from cord blood	blood
25	chr13:98089200-98101000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr13:98089200-98105200	Weak transcription	Fetal Intestine Large	intestine
27	chr13:98089200-98111800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr13:98089200-98111800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr13:98089200-98116400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr13:98089200-98116400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr13:98089200-98116400	Weak transcription	NHEK	skin
32	chr13:98089200-98126600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr13:98089800-98106200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr13:98089800-98107000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr13:98089800-98107600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr13:98089800-98122800	Weak transcription	Small Intestine	intestine
37	chr13:98090000-98097800	Weak transcription	Primary T cells from cord blood	blood
38	chr13:98090000-98105600	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr13:98090800-98101000	Weak transcription	Ovary	ovary
40	chr13:98090800-98101600	Weak transcription	Spleen	Spleen
41	chr13:98090800-98103600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr13:98090800-98116400	Weak transcription	Aorta	Aorta
43	chr13:98091000-98111400	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr13:98091200-98097800	Weak transcription	Brain Substantia Nigra	brain
45	chr13:98091200-98106000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr13:98091200-98112800	Weak transcription	Right Ventricle	heart
47	chr13:98091400-98098000	Weak transcription	Fetal Stomach	stomach
48	chr13:98091400-98105200	Weak transcription	Adipose Nuclei	Adipose
49	chr13:98091400-98108000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr13:98091600-98097800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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