Variant report
| Variant | rs74105181 |
|---|---|
| Chromosome Location | chr13:98073263-98073264 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:98072792..98075244-chr13:98079241..98080858,2 | K562 | blood: | |
| 2 | chr13:98071364..98074292-chr13:98079358..98081519,2 | K562 | blood: | |
| 3 | chr13:98072727..98076727-chr13:98084018..98087708,5 | MCF-7 | breast: | |
| 4 | chr13:98071956..98074377-chr13:98092594..98095295,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000125249 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10161600 | 0.92[EUR][1000 genomes] |
| rs10161693 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12100323 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12100327 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13378123 | 1.00[EUR][1000 genomes] |
| rs13378459 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13378500 | 1.00[EUR][1000 genomes] |
| rs13378554 | 1.00[EUR][1000 genomes] |
| rs13378832 | 1.00[EUR][1000 genomes] |
| rs13378938 | 1.00[EUR][1000 genomes] |
| rs55935003 | 1.00[EUR][1000 genomes] |
| rs9300412 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9300413 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9300414 | 0.81[AFR][1000 genomes] |
| rs9582131 | 0.92[EUR][1000 genomes] |
| rs9582135 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9582137 | 0.87[AMR][1000 genomes] |
| rs9584567 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9584570 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9584572 | 1.00[EUR][1000 genomes] |
| rs9584573 | 1.00[EUR][1000 genomes] |
| rs9584574 | 0.92[EUR][1000 genomes] |
| rs9584575 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9584576 | 0.92[EUR][1000 genomes] |
| rs9584577 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9584578 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9584580 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9584581 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832694 | chr13:97930561-98137882 | ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:98065200-98074800 | Weak transcription | NHDF-Ad | bronchial |
