Variant report

Variant	rs9582131
Chromosome Location	chr13:98077436-98077437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98075639..98078018-chr13:98084903..98087132,2	K562	blood:
2	chr13:98070174..98073119-chr13:98075516..98077748,2	K562	blood:

Variant related genes	Relation type
ENSG00000125249	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10161600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10161693	1.00[EUR][1000 genomes]
rs12100327	0.92[EUR][1000 genomes]
rs12184576	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13378123	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13378459	0.92[EUR][1000 genomes]
rs13378494	0.83[AMR][1000 genomes]
rs13378500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13378554	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13378832	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13378938	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs45560245	1.00[AMR][1000 genomes]
rs55935003	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7318655	0.83[AMR][1000 genomes]
rs73564148	0.83[AMR][1000 genomes]
rs74105181	0.92[EUR][1000 genomes]
rs9300411	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9300414	0.82[EUR][1000 genomes]
rs9582132	0.83[AMR][1000 genomes]
rs9582133	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9582134	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9582136	0.83[AMR][1000 genomes]
rs9582144	0.83[AMR][1000 genomes]
rs9584567	0.92[EUR][1000 genomes]
rs9584570	0.92[EUR][1000 genomes]
rs9584572	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9584573	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9584574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584575	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9584576	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584579	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584582	1.00[AMR][1000 genomes]
rs9584583	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9584595	0.83[AMR][1000 genomes]
rs9584596	0.83[AMR][1000 genomes]
rs9584599	0.83[AMR][1000 genomes]
rs9584615	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1791802	chr13:98076911-98096882	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1804050	chr13:98076911-98096882	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1794802	chr13:98076911-98106042	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1797132	chr13:98076911-98106042	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98075800-98077800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr13:98076000-98081800	Weak transcription	HSMM	muscle
3	chr13:98076400-98078000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr13:98076400-98081200	Weak transcription	Brain Angular Gyrus	brain
5	chr13:98076400-98081600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr13:98076400-98081600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr13:98076400-98081600	Weak transcription	Brain Substantia Nigra	brain
8	chr13:98076400-98081800	Weak transcription	Fetal Heart	heart
9	chr13:98076400-98081800	Weak transcription	Psoas Muscle	Psoas
10	chr13:98076400-98081800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr13:98076400-98081800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr13:98076400-98081800	Weak transcription	NHDF-Ad	bronchial
13	chr13:98076400-98081800	Weak transcription	Osteobl	bone
14	chr13:98076400-98084800	Weak transcription	Esophagus	oesophagus
15	chr13:98076600-98081000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr13:98076600-98081800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:98077200-98078800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr13:98077200-98081600	Weak transcription	Brain Hippocampus Middle	brain
19	chr13:98077400-98078000	Enhancers	Brain Cingulate Gyrus	brain

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