Variant report

Variant	rs9584574
Chromosome Location	chr13:98081455-98081456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:98080619..98083140-chr13:98084232..98086579,3	K562	blood:
2	chr13:98071364..98074292-chr13:98079358..98081519,2	K562	blood:
3	chr13:98081401..98083229-chr13:98085571..98087258,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125249	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10161600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10161693	1.00[EUR][1000 genomes]
rs12100327	0.92[EUR][1000 genomes]
rs12184576	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13378123	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13378459	0.92[EUR][1000 genomes]
rs13378494	0.83[AMR][1000 genomes]
rs13378500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13378554	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13378832	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13378938	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs45560245	1.00[AMR][1000 genomes]
rs55935003	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7318655	0.83[AMR][1000 genomes]
rs73564148	0.83[AMR][1000 genomes]
rs74105181	0.92[EUR][1000 genomes]
rs9300411	1.00[AMR][1000 genomes]
rs9300414	0.82[EUR][1000 genomes]
rs9582131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582132	0.83[AMR][1000 genomes]
rs9582133	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9582134	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9582136	0.83[AMR][1000 genomes]
rs9582144	0.83[AMR][1000 genomes]
rs9584567	0.92[EUR][1000 genomes]
rs9584570	0.92[EUR][1000 genomes]
rs9584572	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9584573	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9584575	1.00[EUR][1000 genomes]
rs9584576	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584579	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584582	1.00[AMR][1000 genomes]
rs9584583	1.00[AMR][1000 genomes]
rs9584595	0.83[AMR][1000 genomes]
rs9584596	0.83[AMR][1000 genomes]
rs9584599	0.83[AMR][1000 genomes]
rs9584615	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1791802	chr13:98076911-98096882	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1804050	chr13:98076911-98096882	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1794802	chr13:98076911-98106042	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1797132	chr13:98076911-98106042	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98076000-98081800	Weak transcription	HSMM	muscle
2	chr13:98076400-98081600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:98076400-98081600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr13:98076400-98081600	Weak transcription	Brain Substantia Nigra	brain
5	chr13:98076400-98081800	Weak transcription	Fetal Heart	heart
6	chr13:98076400-98081800	Weak transcription	Psoas Muscle	Psoas
7	chr13:98076400-98081800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr13:98076400-98081800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr13:98076400-98081800	Weak transcription	NHDF-Ad	bronchial
10	chr13:98076400-98081800	Weak transcription	Osteobl	bone
11	chr13:98076400-98084800	Weak transcription	Esophagus	oesophagus
12	chr13:98076600-98081800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:98077200-98081600	Weak transcription	Brain Hippocampus Middle	brain
14	chr13:98078200-98081600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr13:98079200-98081800	Weak transcription	HepG2	liver
16	chr13:98079400-98084200	Weak transcription	Liver	Liver
17	chr13:98080400-98084400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr13:98080800-98081600	Enhancers	Brain Germinal Matrix	brain
19	chr13:98081000-98081800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr13:98081000-98081800	Enhancers	Fetal Brain Male	brain
21	chr13:98081000-98083800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr13:98081000-98084000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr13:98081200-98081600	Enhancers	Brain Angular Gyrus	brain
24	chr13:98081200-98081600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr13:98081200-98081600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr13:98081200-98081800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr13:98081200-98081800	Enhancers	Brain Anterior Caudate	brain
28	chr13:98081200-98081800	Enhancers	Fetal Kidney	kidney
29	chr13:98081200-98081800	Enhancers	Fetal Lung	lung
30	chr13:98081200-98082800	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr13:98081200-98083600	Enhancers	Dnd41	blood

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