Variant report

Variant	rs13378554
Chromosome Location	chr13:98056038-98056039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10161600	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10161693	0.92[EUR][1000 genomes]
rs12100327	1.00[EUR][1000 genomes]
rs12184576	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs13378123	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13378459	1.00[EUR][1000 genomes]
rs13378500	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13378832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13378938	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45560245	0.83[AMR][1000 genomes]
rs55935003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318655	1.00[CEU][hapmap]
rs74105120	1.00[ASN][1000 genomes]
rs74105181	1.00[EUR][1000 genomes]
rs9300411	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs9300412	1.00[CEU][hapmap]
rs9582131	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9582133	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs9582134	0.83[AMR][1000 genomes]
rs9582135	1.00[CEU][hapmap]
rs9584567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584570	1.00[EUR][1000 genomes]
rs9584572	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584573	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584574	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9584575	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9584576	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9584578	1.00[CEU][hapmap]
rs9584579	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs9584580	1.00[CEU][hapmap]
rs9584582	0.83[AMR][1000 genomes]
rs9584583	1.00[CEU][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98028000-98056400	Weak transcription	Psoas Muscle	Psoas
2	chr13:98044600-98059400	Weak transcription	Left Ventricle	heart
3	chr13:98045400-98059400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr13:98053400-98057000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr13:98054600-98056400	Weak transcription	Fetal Muscle Leg	muscle
6	chr13:98056000-98057200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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