Variant report

Variant	rs10161600
Chromosome Location	chr13:98074053-98074054
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:98072792..98075244-chr13:98079241..98080858,2	K562	blood:
2	chr13:98071364..98074292-chr13:98079358..98081519,2	K562	blood:
3	chr13:98072727..98076727-chr13:98084018..98087708,5	MCF-7	breast:
4	chr13:98071956..98074377-chr13:98092594..98095295,2	K562	blood:

Variant related genes	Relation type
ENSG00000125249	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10161693	1.00[EUR][1000 genomes]
rs12100327	0.92[EUR][1000 genomes]
rs12184576	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13378123	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13378459	0.92[EUR][1000 genomes]
rs13378494	0.83[AMR][1000 genomes]
rs13378500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13378554	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13378832	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13378938	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs45560245	1.00[AMR][1000 genomes]
rs55935003	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7318655	0.83[AMR][1000 genomes]
rs73564148	0.83[AMR][1000 genomes]
rs74105181	0.92[EUR][1000 genomes]
rs9300411	1.00[AMR][1000 genomes]
rs9300414	0.82[EUR][1000 genomes]
rs9582131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582132	0.83[AMR][1000 genomes]
rs9582133	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9582134	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9582136	0.83[AMR][1000 genomes]
rs9582144	0.83[AMR][1000 genomes]
rs9584567	0.92[EUR][1000 genomes]
rs9584570	0.92[EUR][1000 genomes]
rs9584572	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9584573	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9584574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584575	1.00[EUR][1000 genomes]
rs9584576	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584579	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584582	1.00[AMR][1000 genomes]
rs9584583	1.00[AMR][1000 genomes]
rs9584595	0.83[AMR][1000 genomes]
rs9584596	0.83[AMR][1000 genomes]
rs9584599	0.83[AMR][1000 genomes]
rs9584615	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98065200-98074800	Weak transcription	NHDF-Ad	bronchial

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