Variant report

Variant	rs73564148
Chromosome Location	chr13:98233444-98233445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10161600	0.83[AMR][1000 genomes]
rs12100323	0.93[EUR][1000 genomes]
rs12184576	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13378494	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13378500	0.83[AMR][1000 genomes]
rs13378938	0.83[AMR][1000 genomes]
rs16954162	1.00[EUR][1000 genomes]
rs184730	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs187012	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769284	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769285	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769288	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769290	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770217	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770218	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770223	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770224	1.00[ASN][1000 genomes]
rs2770228	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34575456	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349112	1.00[ASN][1000 genomes]
rs349113	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349117	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349118	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349119	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349121	1.00[ASN][1000 genomes]
rs349122	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349124	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349125	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349126	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368997	1.00[ASN][1000 genomes]
rs384217	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45560245	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs471754	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55694844	0.83[EUR][1000 genomes]
rs56057629	0.83[EUR][1000 genomes]
rs57104501	0.83[EUR][1000 genomes]
rs57491525	0.83[EUR][1000 genomes]
rs59446249	0.83[EUR][1000 genomes]
rs60500694	0.93[EUR][1000 genomes]
rs7318655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331217	0.83[EUR][1000 genomes]
rs7331520	0.83[EUR][1000 genomes]
rs7331537	0.83[EUR][1000 genomes]
rs7335777	0.83[EUR][1000 genomes]
rs73564104	0.87[AFR][1000 genomes]
rs73564120	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564126	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564135	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74105498	0.83[EUR][1000 genomes]
rs787468	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805111	1.00[ASN][1000 genomes]
rs9300411	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9300412	0.93[EUR][1000 genomes]
rs9300413	0.93[EUR][1000 genomes]
rs9300418	0.83[EUR][1000 genomes]
rs9300424	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9582131	0.83[AMR][1000 genomes]
rs9582132	0.93[EUR][1000 genomes]
rs9582133	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9582134	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9582135	0.93[EUR][1000 genomes]
rs9582136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582137	1.00[EUR][1000 genomes]
rs9582138	0.87[EUR][1000 genomes]
rs9582139	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9582141	0.83[EUR][1000 genomes]
rs9582144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9582147	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584574	0.83[AMR][1000 genomes]
rs9584576	0.83[AMR][1000 genomes]
rs9584577	0.93[EUR][1000 genomes]
rs9584578	0.93[EUR][1000 genomes]
rs9584579	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9584580	0.93[EUR][1000 genomes]
rs9584581	0.93[EUR][1000 genomes]
rs9584582	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9584583	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9584592	0.83[EUR][1000 genomes]
rs9584595	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584596	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584597	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584598	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584600	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584626	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9805408	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9805779	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900940	chr13:98225221-98281637	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900941	chr13:98230575-98267751	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1140	chr13:98233230-98278197	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98221400-98234200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:98232200-98234200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:98232400-98233600	Enhancers	HepG2	liver
4	chr13:98232600-98233600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:98232600-98234800	Enhancers	Fetal Intestine Small	intestine
6	chr13:98232600-98237400	Enhancers	Fetal Intestine Large	intestine
7	chr13:98233000-98234600	Enhancers	Liver	Liver

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