Variant report

Variant	rs60500694
Chromosome Location	chr13:98124771-98124772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12100323	1.00[EUR][1000 genomes]
rs12184576	1.00[EUR][1000 genomes]
rs13378494	0.93[EUR][1000 genomes]
rs16954162	0.93[EUR][1000 genomes]
rs34575456	0.87[EUR][1000 genomes]
rs45560245	1.00[EUR][1000 genomes]
rs57491525	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs59446249	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7318655	0.93[EUR][1000 genomes]
rs7331217	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7331520	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7335777	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73564120	0.93[EUR][1000 genomes]
rs73564126	0.93[EUR][1000 genomes]
rs73564135	0.93[EUR][1000 genomes]
rs73564148	0.93[EUR][1000 genomes]
rs9300411	1.00[EUR][1000 genomes]
rs9300412	1.00[EUR][1000 genomes]
rs9300413	1.00[EUR][1000 genomes]
rs9582132	1.00[EUR][1000 genomes]
rs9582133	1.00[EUR][1000 genomes]
rs9582134	1.00[EUR][1000 genomes]
rs9582135	1.00[EUR][1000 genomes]
rs9582136	0.93[EUR][1000 genomes]
rs9582137	0.93[EUR][1000 genomes]
rs9582138	0.80[EUR][1000 genomes]
rs9582139	0.80[EUR][1000 genomes]
rs9582141	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9582144	0.93[EUR][1000 genomes]
rs9582147	0.86[EUR][1000 genomes]
rs9584577	1.00[EUR][1000 genomes]
rs9584578	1.00[EUR][1000 genomes]
rs9584579	1.00[EUR][1000 genomes]
rs9584580	1.00[EUR][1000 genomes]
rs9584581	1.00[EUR][1000 genomes]
rs9584582	1.00[EUR][1000 genomes]
rs9584583	1.00[EUR][1000 genomes]
rs9584588	0.95[AFR][1000 genomes]
rs9584595	0.93[EUR][1000 genomes]
rs9584596	0.93[EUR][1000 genomes]
rs9584598	0.93[EUR][1000 genomes]
rs9584599	0.93[EUR][1000 genomes]
rs9584600	0.87[EUR][1000 genomes]
rs9584615	0.93[EUR][1000 genomes]
rs9584626	0.87[EUR][1000 genomes]
rs9805408	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98089200-98126600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr13:98102200-98126400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:98108600-98134600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:98112000-98126600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:98112200-98125000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr13:98113400-98127200	Weak transcription	Right Atrium	heart
7	chr13:98116800-98124800	Weak transcription	Fetal Intestine Small	intestine
8	chr13:98116800-98126600	Weak transcription	Fetal Stomach	stomach
9	chr13:98116800-98127200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr13:98117000-98126600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:98117000-98126600	Weak transcription	Aorta	Aorta
12	chr13:98117000-98130000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr13:98117000-98130000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr13:98117200-98126600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr13:98117400-98126600	Weak transcription	NHDF-Ad	bronchial
16	chr13:98117400-98129600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr13:98117600-98126400	Weak transcription	Fetal Kidney	kidney
18	chr13:98117600-98127000	Weak transcription	Adipose Nuclei	Adipose
19	chr13:98117800-98126600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr13:98117800-98130200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr13:98118200-98126600	Weak transcription	Left Ventricle	heart
22	chr13:98118200-98126800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr13:98118200-98126800	Weak transcription	Fetal Brain Female	brain
24	chr13:98118200-98127200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:98118200-98127200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr13:98118400-98127400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr13:98119200-98126600	Weak transcription	Ovary	ovary
28	chr13:98120800-98130400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr13:98121000-98126600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr13:98121200-98126800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr13:98123000-98126400	Weak transcription	Small Intestine	intestine
32	chr13:98123200-98126800	Weak transcription	Fetal Muscle Leg	muscle
33	chr13:98124600-98126600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr13:98124600-98126600	Weak transcription	Placenta	Placenta
35	chr13:98124600-98126800	Weak transcription	Fetal Lung	lung
36	chr13:98124600-98127200	Weak transcription	Lung	lung

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