Variant report

Variant	rs9805408
Chromosome Location	chr13:98229032-98229033
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs12100323	0.87[EUR][1000 genomes]
rs12184576	0.87[EUR][1000 genomes]
rs13378494	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954162	0.94[EUR][1000 genomes]
rs184730	1.00[ASN][1000 genomes]
rs187012	1.00[ASN][1000 genomes]
rs2769284	1.00[ASN][1000 genomes]
rs2769285	1.00[ASN][1000 genomes]
rs2769288	1.00[ASN][1000 genomes]
rs2769290	1.00[ASN][1000 genomes]
rs2770217	1.00[ASN][1000 genomes]
rs2770218	1.00[ASN][1000 genomes]
rs2770223	1.00[ASN][1000 genomes]
rs2770224	1.00[ASN][1000 genomes]
rs2770228	1.00[ASN][1000 genomes]
rs34575456	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349112	1.00[ASN][1000 genomes]
rs349113	1.00[ASN][1000 genomes]
rs349117	1.00[ASN][1000 genomes]
rs349118	1.00[ASN][1000 genomes]
rs349119	1.00[ASN][1000 genomes]
rs349121	1.00[ASN][1000 genomes]
rs349122	1.00[ASN][1000 genomes]
rs349124	1.00[ASN][1000 genomes]
rs349125	1.00[ASN][1000 genomes]
rs349126	1.00[ASN][1000 genomes]
rs368997	1.00[ASN][1000 genomes]
rs384217	1.00[ASN][1000 genomes]
rs45560245	0.87[EUR][1000 genomes]
rs471754	1.00[ASN][1000 genomes]
rs60500694	0.87[EUR][1000 genomes]
rs7318655	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564120	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564126	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564135	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564148	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs787468	1.00[ASN][1000 genomes]
rs805111	1.00[ASN][1000 genomes]
rs9300411	0.87[EUR][1000 genomes]
rs9300412	0.87[EUR][1000 genomes]
rs9300413	0.87[EUR][1000 genomes]
rs9300424	1.00[ASN][1000 genomes]
rs9582132	0.87[EUR][1000 genomes]
rs9582133	0.87[EUR][1000 genomes]
rs9582134	0.87[EUR][1000 genomes]
rs9582135	0.87[EUR][1000 genomes]
rs9582136	0.94[EUR][1000 genomes]
rs9582137	0.94[EUR][1000 genomes]
rs9582138	0.94[EUR][1000 genomes]
rs9582139	0.94[EUR][1000 genomes]
rs9582144	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9582147	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584577	0.87[EUR][1000 genomes]
rs9584578	0.87[EUR][1000 genomes]
rs9584579	0.87[EUR][1000 genomes]
rs9584580	0.87[EUR][1000 genomes]
rs9584581	0.87[EUR][1000 genomes]
rs9584582	0.87[EUR][1000 genomes]
rs9584583	0.87[EUR][1000 genomes]
rs9584595	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584596	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584597	1.00[ASN][1000 genomes]
rs9584598	0.94[EUR][1000 genomes]
rs9584599	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584600	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584615	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584626	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900940	chr13:98225221-98281637	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98221400-98234200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:98222600-98229200	Weak transcription	HepG2	liver
3	chr13:98225600-98232000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:98229000-98229800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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