Variant report

Variant	rs9584577
Chromosome Location	chr13:98089216-98089217
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98088366..98091907-chr13:98092585..98097383,6	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10161693	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12100323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12100327	0.87[AMR][1000 genomes]
rs12184576	1.00[EUR][1000 genomes]
rs13378459	1.00[AMR][1000 genomes]
rs13378494	0.93[EUR][1000 genomes]
rs16954162	0.93[EUR][1000 genomes]
rs34575456	0.87[EUR][1000 genomes]
rs45560245	1.00[EUR][1000 genomes]
rs60500694	1.00[EUR][1000 genomes]
rs7318655	0.93[EUR][1000 genomes]
rs73564120	0.93[EUR][1000 genomes]
rs73564126	0.93[EUR][1000 genomes]
rs73564135	0.93[EUR][1000 genomes]
rs73564148	0.93[EUR][1000 genomes]
rs74105181	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9300411	1.00[EUR][1000 genomes]
rs9300412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300413	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9300414	0.86[AFR][1000 genomes]
rs9582132	1.00[EUR][1000 genomes]
rs9582133	1.00[EUR][1000 genomes]
rs9582134	1.00[EUR][1000 genomes]
rs9582135	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582136	0.93[EUR][1000 genomes]
rs9582137	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9582138	0.80[EUR][1000 genomes]
rs9582139	0.80[EUR][1000 genomes]
rs9582144	0.93[EUR][1000 genomes]
rs9582147	0.86[EUR][1000 genomes]
rs9584567	1.00[AMR][1000 genomes]
rs9584570	0.87[AMR][1000 genomes]
rs9584575	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9584578	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584579	1.00[EUR][1000 genomes]
rs9584580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584582	1.00[EUR][1000 genomes]
rs9584583	1.00[EUR][1000 genomes]
rs9584595	0.93[EUR][1000 genomes]
rs9584596	0.93[EUR][1000 genomes]
rs9584598	0.93[EUR][1000 genomes]
rs9584599	0.93[EUR][1000 genomes]
rs9584600	0.87[EUR][1000 genomes]
rs9584615	0.93[EUR][1000 genomes]
rs9584626	0.87[EUR][1000 genomes]
rs9805408	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1791802	chr13:98076911-98096882	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1804050	chr13:98076911-98096882	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1794802	chr13:98076911-98106042	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1797132	chr13:98076911-98106042	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98084400-98089600	Active TSS	Right Atrium	heart
2	chr13:98084600-98089600	Active TSS	Aorta	Aorta
3	chr13:98084600-98090000	Active TSS	Fetal Brain Female	brain
4	chr13:98084800-98089800	Active TSS	Brain Anterior Caudate	brain
5	chr13:98087400-98090400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr13:98087400-98090400	Weak transcription	Spleen	Spleen
7	chr13:98087400-98101000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:98087400-98122200	Weak transcription	Gastric	stomach
9	chr13:98087600-98089600	Flanking Active TSS	Dnd41	blood
10	chr13:98087600-98089800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr13:98087600-98091200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr13:98087600-98091200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:98087600-98101200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr13:98087600-98104600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr13:98087600-98116400	Weak transcription	Esophagus	oesophagus
16	chr13:98087600-98124400	Weak transcription	Pancreas	Pancrea
17	chr13:98087800-98090000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr13:98087800-98092200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr13:98088000-98089800	Enhancers	Small Intestine	intestine
20	chr13:98088000-98090600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:98088400-98089800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr13:98088400-98090000	Enhancers	Primary T cells from cord blood	blood
23	chr13:98088400-98090200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr13:98088400-98090600	Weak transcription	Right Ventricle	heart
25	chr13:98088400-98091200	Enhancers	Brain Substantia Nigra	brain
26	chr13:98088400-98091400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr13:98088400-98095200	Weak transcription	Left Ventricle	heart
28	chr13:98088400-98098800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr13:98088400-98101000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr13:98088400-98101000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr13:98088400-98108000	Weak transcription	Fetal Thymus	thymus
32	chr13:98088400-98111600	Weak transcription	Psoas Muscle	Psoas
33	chr13:98088400-98116400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr13:98088600-98089400	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
35	chr13:98088600-98089400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr13:98088600-98089400	Weak transcription	K562	blood
37	chr13:98088600-98089800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr13:98088600-98090000	Enhancers	Muscle Satellite Cultured Cells	--
39	chr13:98088600-98090400	Weak transcription	Fetal Muscle Leg	muscle
40	chr13:98088600-98090800	Enhancers	Colon Smooth Muscle	Colon
41	chr13:98088600-98090800	Weak transcription	Placenta	Placenta
42	chr13:98088600-98092000	Enhancers	HepG2	liver
43	chr13:98088600-98093000	Weak transcription	A549	lung
44	chr13:98088600-98095200	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr13:98088600-98095800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr13:98088600-98097000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:98088600-98112800	Weak transcription	Thymus	Thymus
48	chr13:98088600-98119600	Weak transcription	NH-A	brain
49	chr13:98088800-98089400	Flanking Active TSS	Brain Germinal Matrix	brain
50	chr13:98088800-98089400	Flanking Active TSS	Fetal Kidney	kidney

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