Variant report

Variant	rs9584598
Chromosome Location	chr13:98197881-98197882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs12100323	0.93[EUR][1000 genomes]
rs12184576	0.93[EUR][1000 genomes]
rs13378494	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16954162	1.00[EUR][1000 genomes]
rs184730	0.83[EUR][1000 genomes]
rs187012	0.83[EUR][1000 genomes]
rs2769284	0.83[EUR][1000 genomes]
rs2769285	0.83[EUR][1000 genomes]
rs2769288	0.83[EUR][1000 genomes]
rs2769290	0.83[EUR][1000 genomes]
rs2770217	0.83[EUR][1000 genomes]
rs2770218	0.83[EUR][1000 genomes]
rs2770223	0.83[EUR][1000 genomes]
rs2770228	0.83[EUR][1000 genomes]
rs34575456	0.94[EUR][1000 genomes]
rs349113	0.83[EUR][1000 genomes]
rs349117	0.83[EUR][1000 genomes]
rs349118	0.83[EUR][1000 genomes]
rs349119	0.83[EUR][1000 genomes]
rs349122	0.83[EUR][1000 genomes]
rs349124	0.83[EUR][1000 genomes]
rs349125	0.83[EUR][1000 genomes]
rs349126	0.83[EUR][1000 genomes]
rs384217	0.83[EUR][1000 genomes]
rs45560245	0.93[EUR][1000 genomes]
rs471754	0.83[EUR][1000 genomes]
rs55694844	0.83[EUR][1000 genomes]
rs56057629	0.83[EUR][1000 genomes]
rs57104501	0.83[EUR][1000 genomes]
rs57491525	0.83[EUR][1000 genomes]
rs59446249	0.83[EUR][1000 genomes]
rs60500694	0.93[EUR][1000 genomes]
rs7318655	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7331217	0.83[EUR][1000 genomes]
rs7331520	0.83[EUR][1000 genomes]
rs7331537	0.83[EUR][1000 genomes]
rs7335777	0.83[EUR][1000 genomes]
rs73564120	1.00[EUR][1000 genomes]
rs73564126	1.00[EUR][1000 genomes]
rs73564135	1.00[EUR][1000 genomes]
rs73564148	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74105498	0.83[EUR][1000 genomes]
rs787468	0.83[EUR][1000 genomes]
rs9300411	0.93[EUR][1000 genomes]
rs9300412	0.93[EUR][1000 genomes]
rs9300413	0.93[EUR][1000 genomes]
rs9300418	0.83[EUR][1000 genomes]
rs9300424	0.83[EUR][1000 genomes]
rs9582132	0.93[EUR][1000 genomes]
rs9582133	0.93[EUR][1000 genomes]
rs9582134	0.93[EUR][1000 genomes]
rs9582135	0.93[EUR][1000 genomes]
rs9582136	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582137	1.00[EUR][1000 genomes]
rs9582138	0.87[EUR][1000 genomes]
rs9582139	0.87[EUR][1000 genomes]
rs9582141	0.83[EUR][1000 genomes]
rs9582144	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582147	0.93[EUR][1000 genomes]
rs9584577	0.93[EUR][1000 genomes]
rs9584578	0.93[EUR][1000 genomes]
rs9584579	0.93[EUR][1000 genomes]
rs9584580	0.93[EUR][1000 genomes]
rs9584581	0.93[EUR][1000 genomes]
rs9584582	0.93[EUR][1000 genomes]
rs9584583	0.93[EUR][1000 genomes]
rs9584592	0.83[EUR][1000 genomes]
rs9584595	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584596	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584597	0.83[EUR][1000 genomes]
rs9584599	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584600	0.94[EUR][1000 genomes]
rs9584615	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584626	0.94[EUR][1000 genomes]
rs9805408	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98195800-98201000	Weak transcription	Right Atrium	heart
2	chr13:98196400-98200600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:98196800-98200600	Weak transcription	NHDF-Ad	bronchial
4	chr13:98196800-98201000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:98197000-98201000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:98197200-98200800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:98197400-98198000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:98197400-98198000	Enhancers	Spleen	Spleen
9	chr13:98197600-98200000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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