Variant report

Variant	rs7331217
Chromosome Location	chr13:98148852-98148853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:42531904..42532590-chr13:98148609..98149589,2	MCF-7	breast:

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs12184576	1.00[CEU][hapmap]
rs13378494	0.83[EUR][1000 genomes]
rs16954162	0.83[EUR][1000 genomes]
rs184730	1.00[EUR][1000 genomes]
rs187012	1.00[EUR][1000 genomes]
rs2026686	0.81[EUR][1000 genomes]
rs2769284	1.00[EUR][1000 genomes]
rs2769285	1.00[EUR][1000 genomes]
rs2769286	0.95[EUR][1000 genomes]
rs2769288	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2769290	1.00[EUR][1000 genomes]
rs2770217	1.00[EUR][1000 genomes]
rs2770218	1.00[EUR][1000 genomes]
rs2770223	1.00[EUR][1000 genomes]
rs2770224	0.95[EUR][1000 genomes]
rs2770228	1.00[EUR][1000 genomes]
rs349112	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs349113	1.00[EUR][1000 genomes]
rs349117	1.00[EUR][1000 genomes]
rs349118	1.00[EUR][1000 genomes]
rs349119	1.00[EUR][1000 genomes]
rs349122	1.00[EUR][1000 genomes]
rs349124	1.00[EUR][1000 genomes]
rs349125	1.00[EUR][1000 genomes]
rs349126	1.00[EUR][1000 genomes]
rs381224	0.85[EUR][1000 genomes]
rs384217	1.00[EUR][1000 genomes]
rs471754	1.00[EUR][1000 genomes]
rs55694844	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56057629	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57104501	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57491525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59446249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60500694	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6491353	0.81[AFR][1000 genomes]
rs7318655	1.00[CEU][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes]
rs7331520	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7331537	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7335097	0.83[ASW][hapmap]
rs7335777	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564120	0.83[EUR][1000 genomes]
rs73564126	0.83[EUR][1000 genomes]
rs73564135	0.83[EUR][1000 genomes]
rs73564148	0.83[EUR][1000 genomes]
rs74105496	0.95[EUR][1000 genomes]
rs74105498	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74108409	0.94[EUR][1000 genomes]
rs787468	1.00[EUR][1000 genomes]
rs805111	0.95[EUR][1000 genomes]
rs9300411	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]
rs9300412	1.00[CEU][hapmap]
rs9300418	1.00[EUR][1000 genomes]
rs9300424	1.00[EUR][1000 genomes]
rs9582133	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]
rs9582135	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9582136	0.83[EUR][1000 genomes]
rs9582137	0.83[EUR][1000 genomes]
rs9582141	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582144	0.83[EUR][1000 genomes]
rs9584575	0.83[GIH][hapmap];1.00[MEX][hapmap]
rs9584578	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]
rs9584579	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap]
rs9584580	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap]
rs9584583	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9584588	0.99[AFR][1000 genomes]
rs9584592	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584595	0.83[EUR][1000 genomes]
rs9584596	0.83[EUR][1000 genomes]
rs9584597	1.00[EUR][1000 genomes]
rs9584598	0.83[EUR][1000 genomes]
rs9584599	0.83[EUR][1000 genomes]
rs9584615	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1139	chr13:98133793-98178130	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2042972	chr13:98148388-98148896	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98146000-98150400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:98147400-98154400	Weak transcription	Right Atrium	heart
3	chr13:98147600-98150600	Enhancers	Fetal Stomach	stomach
4	chr13:98147800-98151200	Enhancers	HepG2	liver
5	chr13:98148000-98153800	Weak transcription	Fetal Muscle Leg	muscle
6	chr13:98148200-98149200	Enhancers	Fetal Lung	lung
7	chr13:98148800-98149200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr13:98148800-98149200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr13:98148800-98149200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:98148800-98149400	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links