Variant report

Variant	rs2770223
Chromosome Location	chr13:98196082-98196083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs12184576	1.00[CEU][hapmap]
rs13378494	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954162	0.83[EUR][1000 genomes]
rs184730	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs187012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026686	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2769284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769285	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769286	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2769288	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769290	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770217	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770218	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770224	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770228	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34575456	1.00[ASN][1000 genomes]
rs349112	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349113	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349117	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349118	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349121	1.00[ASN][1000 genomes]
rs349122	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349124	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349125	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349126	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368997	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs381224	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs384217	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471754	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55694844	1.00[EUR][1000 genomes]
rs56057629	1.00[EUR][1000 genomes]
rs57104501	1.00[EUR][1000 genomes]
rs57491525	1.00[EUR][1000 genomes]
rs59446249	1.00[EUR][1000 genomes]
rs7318655	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331217	1.00[EUR][1000 genomes]
rs7331520	1.00[EUR][1000 genomes]
rs7331537	1.00[EUR][1000 genomes]
rs7335777	1.00[EUR][1000 genomes]
rs73564120	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564126	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564135	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564148	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74105496	0.95[EUR][1000 genomes]
rs74105498	1.00[EUR][1000 genomes]
rs74108409	0.94[EUR][1000 genomes]
rs787468	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805111	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300411	1.00[CEU][hapmap]
rs9300412	1.00[CEU][hapmap]
rs9300418	1.00[EUR][1000 genomes]
rs9300424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9582133	1.00[CEU][hapmap]
rs9582135	1.00[CEU][hapmap]
rs9582136	0.83[EUR][1000 genomes]
rs9582137	0.83[EUR][1000 genomes]
rs9582141	1.00[EUR][1000 genomes]
rs9582144	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9582147	1.00[ASN][1000 genomes]
rs9584578	1.00[CEU][hapmap]
rs9584579	1.00[CEU][hapmap]
rs9584580	1.00[CEU][hapmap]
rs9584583	1.00[CEU][hapmap]
rs9584592	1.00[EUR][1000 genomes]
rs9584595	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584596	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584597	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584598	0.83[EUR][1000 genomes]
rs9584599	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584600	1.00[ASN][1000 genomes]
rs9584615	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584626	1.00[ASN][1000 genomes]
rs9805408	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98192400-98196600	Enhancers	Fetal Stomach	stomach
2	chr13:98193400-98197600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:98194400-98197000	Enhancers	NHLF	lung
4	chr13:98195400-98196400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:98195800-98196800	Enhancers	NHDF-Ad	bronchial
6	chr13:98195800-98197000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:98195800-98197200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:98195800-98201000	Weak transcription	Right Atrium	heart
9	chr13:98196000-98196800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:98196000-98196800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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