Variant report

Variant	rs2026686
Chromosome Location	chr13:98194515-98194516
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12184576	1.00[CEU][hapmap]
rs184730	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs187012	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2769284	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2769285	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2769288	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2769290	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2770217	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2770218	0.81[EUR][1000 genomes]
rs2770223	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2770228	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs349112	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs349113	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs349117	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs349118	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs349119	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs349121	0.92[AFR][1000 genomes]
rs349122	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs349124	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs349125	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs349126	0.81[EUR][1000 genomes]
rs368997	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs381224	0.96[AFR][1000 genomes]
rs384217	0.81[EUR][1000 genomes]
rs449365	0.85[AFR][1000 genomes]
rs471754	0.81[EUR][1000 genomes]
rs55694844	0.81[EUR][1000 genomes]
rs56057629	0.81[EUR][1000 genomes]
rs57104501	0.81[EUR][1000 genomes]
rs57491525	0.81[EUR][1000 genomes]
rs59446249	0.81[EUR][1000 genomes]
rs7318655	1.00[CEU][hapmap]
rs7331217	0.81[EUR][1000 genomes]
rs7331520	0.81[EUR][1000 genomes]
rs7331537	0.81[EUR][1000 genomes]
rs7335777	0.81[EUR][1000 genomes]
rs74105498	0.81[EUR][1000 genomes]
rs787468	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs805111	0.82[AFR][1000 genomes]
rs9300411	1.00[CEU][hapmap]
rs9300412	1.00[CEU][hapmap]
rs9300418	0.81[EUR][1000 genomes]
rs9300424	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9582133	1.00[CEU][hapmap]
rs9582135	1.00[CEU][hapmap]
rs9582141	0.81[EUR][1000 genomes]
rs9584578	1.00[CEU][hapmap]
rs9584579	1.00[CEU][hapmap]
rs9584580	1.00[CEU][hapmap]
rs9584583	1.00[CEU][hapmap]
rs9584592	0.81[EUR][1000 genomes]
rs9584597	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98191800-98195200	Enhancers	Fetal Lung	lung
2	chr13:98192400-98194600	Weak transcription	Fetal Heart	heart
3	chr13:98192400-98196000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:98192400-98196600	Enhancers	Fetal Stomach	stomach
5	chr13:98192800-98195400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:98193000-98195600	Enhancers	Fetal Muscle Leg	muscle
7	chr13:98193400-98194800	Enhancers	Left Ventricle	heart
8	chr13:98193400-98197600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr13:98194000-98194600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr13:98194000-98194600	Weak transcription	Right Ventricle	heart
11	chr13:98194200-98194800	Enhancers	Fetal Kidney	kidney
12	chr13:98194400-98194800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
13	chr13:98194400-98194800	Enhancers	NHDF-Ad	bronchial
14	chr13:98194400-98197000	Enhancers	NHLF	lung

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