Variant report

Variant	rs349125
Chromosome Location	chr13:98201173-98201174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs13378494	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954162	0.83[EUR][1000 genomes]
rs184730	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs187012	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026686	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2769284	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769285	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769286	0.95[EUR][1000 genomes]
rs2769288	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769290	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770217	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770218	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770223	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770224	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770228	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34575456	1.00[ASN][1000 genomes]
rs349112	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349113	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349117	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349118	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349119	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349121	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs349122	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349124	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349126	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368997	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs381224	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs384217	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs449365	0.84[AFR][1000 genomes]
rs471754	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55694844	1.00[EUR][1000 genomes]
rs56057629	1.00[EUR][1000 genomes]
rs57104501	1.00[EUR][1000 genomes]
rs57491525	1.00[EUR][1000 genomes]
rs59446249	1.00[EUR][1000 genomes]
rs7318655	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331217	1.00[EUR][1000 genomes]
rs7331520	1.00[EUR][1000 genomes]
rs7331537	1.00[EUR][1000 genomes]
rs7335777	1.00[EUR][1000 genomes]
rs73564120	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564126	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564135	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564148	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74105496	0.95[EUR][1000 genomes]
rs74105498	1.00[EUR][1000 genomes]
rs74108409	0.94[EUR][1000 genomes]
rs787468	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805111	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300418	1.00[EUR][1000 genomes]
rs9300424	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9582136	0.83[EUR][1000 genomes]
rs9582137	0.83[EUR][1000 genomes]
rs9582141	1.00[EUR][1000 genomes]
rs9582144	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9582147	1.00[ASN][1000 genomes]
rs9584592	1.00[EUR][1000 genomes]
rs9584595	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584596	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584597	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584598	0.83[EUR][1000 genomes]
rs9584599	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584600	1.00[ASN][1000 genomes]
rs9584615	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584626	1.00[ASN][1000 genomes]
rs9805408	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98198600-98201200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:98200000-98201600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:98200600-98201400	Enhancers	NHDF-Ad	bronchial
4	chr13:98200600-98201600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:98200600-98202000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:98200800-98201400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:98200800-98201600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr13:98201000-98201200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:98201000-98201200	Enhancers	Right Atrium	heart
10	chr13:98201000-98201600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:98201000-98201800	Enhancers	Fetal Kidney	kidney

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