Variant report

Variant	rs55694844
Chromosome Location	chr13:98145164-98145165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs13378494	0.83[EUR][1000 genomes]
rs16954162	0.83[EUR][1000 genomes]
rs184730	1.00[EUR][1000 genomes]
rs187012	1.00[EUR][1000 genomes]
rs2026686	0.81[EUR][1000 genomes]
rs2769284	1.00[EUR][1000 genomes]
rs2769285	1.00[EUR][1000 genomes]
rs2769286	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2769288	1.00[EUR][1000 genomes]
rs2769290	1.00[EUR][1000 genomes]
rs2770217	1.00[EUR][1000 genomes]
rs2770218	1.00[EUR][1000 genomes]
rs2770223	1.00[EUR][1000 genomes]
rs2770224	0.95[EUR][1000 genomes]
rs2770228	1.00[EUR][1000 genomes]
rs349112	0.95[EUR][1000 genomes]
rs349113	1.00[EUR][1000 genomes]
rs349117	1.00[EUR][1000 genomes]
rs349118	1.00[EUR][1000 genomes]
rs349119	1.00[EUR][1000 genomes]
rs349122	1.00[EUR][1000 genomes]
rs349124	1.00[EUR][1000 genomes]
rs349125	1.00[EUR][1000 genomes]
rs349126	1.00[EUR][1000 genomes]
rs381224	0.85[EUR][1000 genomes]
rs384217	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs471754	1.00[EUR][1000 genomes]
rs56057629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57104501	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57491525	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59446249	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7318655	0.83[EUR][1000 genomes]
rs7331217	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7331520	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7331537	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7331838	0.80[AFR][1000 genomes]
rs7335777	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564120	0.83[EUR][1000 genomes]
rs73564126	0.83[EUR][1000 genomes]
rs73564135	0.83[EUR][1000 genomes]
rs73564148	0.83[EUR][1000 genomes]
rs74105496	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74105498	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74108409	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs787468	1.00[EUR][1000 genomes]
rs805111	0.95[EUR][1000 genomes]
rs9300418	1.00[EUR][1000 genomes]
rs9300424	1.00[EUR][1000 genomes]
rs9582136	0.83[EUR][1000 genomes]
rs9582137	0.83[EUR][1000 genomes]
rs9582141	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9582144	0.83[EUR][1000 genomes]
rs9584588	0.80[AFR][1000 genomes]
rs9584592	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9584595	0.83[EUR][1000 genomes]
rs9584596	0.83[EUR][1000 genomes]
rs9584597	1.00[EUR][1000 genomes]
rs9584598	0.83[EUR][1000 genomes]
rs9584599	0.83[EUR][1000 genomes]
rs9584615	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1139	chr13:98133793-98178130	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98142600-98145200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:98143200-98145800	Enhancers	HepG2	liver
3	chr13:98144200-98145600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:98144200-98148200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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