Variant report

Variant	rs349112
Chromosome Location	chr13:98206496-98206497
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs12184576	1.00[CEU][hapmap]
rs13378494	1.00[ASN][1000 genomes]
rs184730	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs187012	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026686	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2769284	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769285	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769286	0.89[EUR][1000 genomes]
rs2769288	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769290	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770217	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770218	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770223	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770224	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770228	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34575456	1.00[ASN][1000 genomes]
rs349113	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349117	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349118	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349119	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349121	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs349122	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349124	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349125	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349126	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368997	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs381224	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs384217	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471754	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55694844	0.95[EUR][1000 genomes]
rs56057629	0.95[EUR][1000 genomes]
rs57104501	0.95[EUR][1000 genomes]
rs57491525	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59446249	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7318655	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7331217	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7331520	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7331537	0.95[EUR][1000 genomes]
rs7335777	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73564120	1.00[ASN][1000 genomes]
rs73564126	1.00[ASN][1000 genomes]
rs73564135	1.00[ASN][1000 genomes]
rs73564148	1.00[ASN][1000 genomes]
rs74105496	0.89[EUR][1000 genomes]
rs74105498	0.95[EUR][1000 genomes]
rs74108409	0.89[EUR][1000 genomes]
rs787468	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805111	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300411	1.00[CEU][hapmap]
rs9300412	1.00[CEU][hapmap]
rs9300418	0.95[EUR][1000 genomes]
rs9300424	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9582133	1.00[CEU][hapmap]
rs9582135	1.00[CEU][hapmap]
rs9582141	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9582144	1.00[ASN][1000 genomes]
rs9582147	1.00[ASN][1000 genomes]
rs9584578	1.00[CEU][hapmap]
rs9584579	1.00[CEU][hapmap]
rs9584580	1.00[CEU][hapmap]
rs9584583	1.00[CEU][hapmap]
rs9584592	0.95[EUR][1000 genomes]
rs9584595	1.00[ASN][1000 genomes]
rs9584596	1.00[ASN][1000 genomes]
rs9584597	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584599	1.00[ASN][1000 genomes]
rs9584600	1.00[ASN][1000 genomes]
rs9584615	1.00[ASN][1000 genomes]
rs9584626	1.00[ASN][1000 genomes]
rs9805408	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98205800-98208000	Enhancers	Fetal Brain Male	brain

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