Variant report

Variant	rs9300424
Chromosome Location	chr13:98236100-98236101
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs13378494	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954162	0.83[EUR][1000 genomes]
rs184730	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs187012	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026686	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2769284	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769285	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769286	0.95[EUR][1000 genomes]
rs2769288	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769290	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770217	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770218	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770223	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770224	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2770228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34575456	1.00[ASN][1000 genomes]
rs349112	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349113	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349117	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349118	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349119	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349121	1.00[ASN][1000 genomes]
rs349122	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349124	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349125	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349126	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs368997	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs381224	0.85[EUR][1000 genomes]
rs384217	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs471754	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55694844	1.00[EUR][1000 genomes]
rs56057629	1.00[EUR][1000 genomes]
rs57104501	1.00[EUR][1000 genomes]
rs57491525	1.00[EUR][1000 genomes]
rs59446249	1.00[EUR][1000 genomes]
rs7318655	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331217	1.00[EUR][1000 genomes]
rs7331520	1.00[EUR][1000 genomes]
rs7331537	1.00[EUR][1000 genomes]
rs7335777	1.00[EUR][1000 genomes]
rs73564120	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564126	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564135	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73564148	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74105496	0.95[EUR][1000 genomes]
rs74105498	1.00[EUR][1000 genomes]
rs74108409	0.94[EUR][1000 genomes]
rs787468	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs805111	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9300418	1.00[EUR][1000 genomes]
rs9582136	0.83[EUR][1000 genomes]
rs9582137	0.83[EUR][1000 genomes]
rs9582141	1.00[EUR][1000 genomes]
rs9582144	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9582147	1.00[ASN][1000 genomes]
rs9584592	1.00[EUR][1000 genomes]
rs9584595	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584596	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584597	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584598	0.83[EUR][1000 genomes]
rs9584599	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584600	1.00[ASN][1000 genomes]
rs9584615	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584626	1.00[ASN][1000 genomes]
rs9805408	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900940	chr13:98225221-98281637	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900941	chr13:98230575-98267751	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1140	chr13:98233230-98278197	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98232600-98237400	Enhancers	Fetal Intestine Large	intestine
2	chr13:98234200-98237400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:98235600-98237800	Enhancers	HepG2	liver
4	chr13:98235800-98236200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:98235800-98236600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr13:98235800-98237400	Enhancers	Fetal Intestine Small	intestine
7	chr13:98236000-98236200	Enhancers	Pancreas	Pancrea
8	chr13:98236000-98236400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr13:98236000-98237800	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links