Variant report

Variant	rs349121
Chromosome Location	chr13:98198519-98198520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs13378494	1.00[ASN][1000 genomes]
rs184730	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs187012	1.00[ASN][1000 genomes]
rs2026686	0.92[AFR][1000 genomes]
rs2769284	1.00[ASN][1000 genomes]
rs2769285	1.00[ASN][1000 genomes]
rs2769288	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2769290	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2770217	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2770218	1.00[ASN][1000 genomes]
rs2770223	1.00[ASN][1000 genomes]
rs2770224	1.00[ASN][1000 genomes]
rs2770228	1.00[ASN][1000 genomes]
rs34575456	1.00[ASN][1000 genomes]
rs349112	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs349113	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs349117	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs349118	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs349119	1.00[ASN][1000 genomes]
rs349122	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs349124	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs349125	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs349126	1.00[ASN][1000 genomes]
rs368997	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs381224	0.93[AFR][1000 genomes]
rs384217	1.00[ASN][1000 genomes]
rs449365	0.82[AFR][1000 genomes]
rs471754	1.00[ASN][1000 genomes]
rs7318655	1.00[ASN][1000 genomes]
rs73564120	1.00[ASN][1000 genomes]
rs73564126	1.00[ASN][1000 genomes]
rs73564135	1.00[ASN][1000 genomes]
rs73564148	1.00[ASN][1000 genomes]
rs787468	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs805111	1.00[ASN][1000 genomes]
rs9300424	1.00[ASN][1000 genomes]
rs9582144	1.00[ASN][1000 genomes]
rs9582147	1.00[ASN][1000 genomes]
rs9584595	1.00[ASN][1000 genomes]
rs9584596	1.00[ASN][1000 genomes]
rs9584597	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9584599	1.00[ASN][1000 genomes]
rs9584600	1.00[ASN][1000 genomes]
rs9584615	1.00[ASN][1000 genomes]
rs9584626	1.00[ASN][1000 genomes]
rs9805408	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98195800-98201000	Weak transcription	Right Atrium	heart
2	chr13:98196400-98200600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:98196800-98200600	Weak transcription	NHDF-Ad	bronchial
4	chr13:98196800-98201000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:98197000-98201000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:98197200-98200800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:98197600-98200000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:98198400-98198800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr13:98198400-98199000	Active TSS	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links