Variant report

Variant	rs9582139
Chromosome Location	chr13:98137058-98137059
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12100323	0.80[EUR][1000 genomes]
rs12184576	0.80[EUR][1000 genomes]
rs13378494	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16954162	0.87[EUR][1000 genomes]
rs34575456	0.94[EUR][1000 genomes]
rs45560245	0.80[EUR][1000 genomes]
rs60500694	0.80[EUR][1000 genomes]
rs7318655	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73564120	0.87[EUR][1000 genomes]
rs73564126	0.87[EUR][1000 genomes]
rs73564135	0.87[EUR][1000 genomes]
rs73564148	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9300411	0.80[EUR][1000 genomes]
rs9300412	0.80[EUR][1000 genomes]
rs9300413	0.80[EUR][1000 genomes]
rs9582132	0.80[EUR][1000 genomes]
rs9582133	0.80[EUR][1000 genomes]
rs9582134	0.80[EUR][1000 genomes]
rs9582135	0.80[EUR][1000 genomes]
rs9582136	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9582137	0.87[EUR][1000 genomes]
rs9582138	1.00[EUR][1000 genomes]
rs9582144	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9582147	0.80[EUR][1000 genomes]
rs9584577	0.80[EUR][1000 genomes]
rs9584578	0.80[EUR][1000 genomes]
rs9584579	0.80[EUR][1000 genomes]
rs9584580	0.80[EUR][1000 genomes]
rs9584581	0.80[EUR][1000 genomes]
rs9584582	0.80[EUR][1000 genomes]
rs9584583	0.80[EUR][1000 genomes]
rs9584595	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9584596	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9584598	0.87[EUR][1000 genomes]
rs9584599	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9584600	0.81[EUR][1000 genomes]
rs9584615	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9584626	0.94[EUR][1000 genomes]
rs9805408	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1139	chr13:98133793-98178130	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98135800-98137400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:98137000-98137600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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