Variant report

Variant	rs7627636
Chromosome Location	chr3:51540640-51540641
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:51421519..51423877-chr3:51540078..51542702,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145050	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs12330534	1.00[ASN][1000 genomes]
rs13314120	1.00[ASN][1000 genomes]
rs13316894	1.00[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap]
rs13321674	1.00[ASN][1000 genomes]
rs13433729	1.00[ASN][1000 genomes]
rs17051832	1.00[ASN][1000 genomes]
rs17081501	1.00[ASN][1000 genomes]
rs28421789	1.00[ASN][1000 genomes]
rs28452990	1.00[ASN][1000 genomes]
rs28626048	0.88[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2883900	1.00[ASN][1000 genomes]
rs56942057	1.00[ASN][1000 genomes]
rs59064710	1.00[ASN][1000 genomes]
rs59525691	1.00[ASN][1000 genomes]
rs60823123	1.00[ASN][1000 genomes]
rs61440245	1.00[ASN][1000 genomes]
rs61737032	1.00[ASN][1000 genomes]
rs6779163	1.00[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap]
rs6782997	1.00[LWK][hapmap];1.00[MKK][hapmap];0.85[YRI][hapmap]
rs6806124	1.00[YRI][hapmap]
rs72951441	1.00[ASN][1000 genomes]
rs72951452	1.00[ASN][1000 genomes]
rs72951472	1.00[ASN][1000 genomes]
rs72951485	1.00[ASN][1000 genomes]
rs72951486	1.00[ASN][1000 genomes]
rs72953413	1.00[ASN][1000 genomes]
rs72953417	1.00[ASN][1000 genomes]
rs72953419	1.00[ASN][1000 genomes]
rs72953421	1.00[ASN][1000 genomes]
rs72953423	1.00[ASN][1000 genomes]
rs72953429	1.00[ASN][1000 genomes]
rs904144	1.00[ASN][1000 genomes]
rs9311470	1.00[ASN][1000 genomes]
rs9808940	1.00[ASN][1000 genomes]
rs9809757	1.00[ASN][1000 genomes]
rs9812008	1.00[ASN][1000 genomes]
rs9812682	1.00[ASN][1000 genomes]
rs9815684	1.00[ASN][1000 genomes]
rs9816075	1.00[ASN][1000 genomes]
rs9824779	1.00[ASN][1000 genomes]
rs9826664	1.00[ASN][1000 genomes]
rs9827917	1.00[ASN][1000 genomes]
rs9828325	1.00[YRI][hapmap]
rs9838294	1.00[ASN][1000 genomes]
rs9838942	1.00[ASN][1000 genomes]
rs9838994	1.00[ASN][1000 genomes]
rs9839516	1.00[ASN][1000 genomes]
rs9839608	1.00[ASN][1000 genomes]
rs9842066	1.00[ASN][1000 genomes]
rs9844541	1.00[ASN][1000 genomes]
rs9846343	1.00[ASN][1000 genomes]
rs9855214	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9855809	1.00[ASN][1000 genomes]
rs9857893	1.00[ASN][1000 genomes]
rs9864952	1.00[ASN][1000 genomes]
rs9866513	1.00[ASN][1000 genomes]
rs9866604	1.00[ASN][1000 genomes]
rs9870147	1.00[ASN][1000 genomes]
rs9875460	1.00[ASN][1000 genomes]
rs9878053	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs9880050	1.00[ASN][1000 genomes]
rs9880909	1.00[ASN][1000 genomes]
rs9881402	1.00[ASN][1000 genomes]
rs9882601	1.00[ASN][1000 genomes]
rs9990341	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51535000-51541400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:51536400-51543200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr3:51537000-51543800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:51538000-51543400	Weak transcription	Placenta	Placenta
5	chr3:51540600-51540800	Bivalent Enhancer	HepG2	liver

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