Variant report

Variant	rs10077695
Chromosome Location	chr5:106974411-106974412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10074258	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11242641	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12187753	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13163062	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13170272	0.83[CEU][hapmap]
rs17160246	0.80[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs17160255	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs17160261	0.83[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs17160272	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17160287	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17160301	0.87[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4090594	0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55754532	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62355651	0.83[ASN][1000 genomes]
rs7703820	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs967270	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106966800-106979600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:106968400-106977600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:106969400-106978800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:106969600-106988600	Weak transcription	Fetal Stomach	stomach
6	chr5:106970200-106985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:106971600-106975000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:106971600-106975800	Weak transcription	A549	lung
9	chr5:106971600-106978800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:106971800-106975000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:106972200-106975000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:106972200-106976400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr5:106972200-106986000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:106972600-106975000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:106972600-106981800	Weak transcription	HMEC	breast
16	chr5:106972800-106976000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:106972800-106983400	Weak transcription	Fetal Lung	lung
18	chr5:106973200-106975000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:106973200-106978800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr5:106973200-106981600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:106973400-106975800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:106973400-106982000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr5:106974000-106975600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:106974400-106976600	Enhancers	Fetal Heart	heart

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